Index A | B | C | D | E | F | G | I | L | M | N | O | R | T | V | W | Z A AffinitiesTask (class in dacapo.experiments.tasks) AffinitiesTaskConfig (class in dacapo.experiments.tasks) Architecture (class in dacapo.experiments.architectures) architecture_type (dacapo.experiments.architectures.CNNectomeUNetConfig attribute) Array (class in dacapo.experiments.datasplits.datasets.arrays) attrs (dacapo.experiments.datasplits.datasets.arrays.Array property) (dacapo.experiments.datasplits.datasets.arrays.BinarizeArray property) (dacapo.experiments.datasplits.datasets.arrays.ConcatArray property) (dacapo.experiments.datasplits.datasets.arrays.CropArray property) (dacapo.experiments.datasplits.datasets.arrays.IntensitiesArray property) (dacapo.experiments.datasplits.datasets.arrays.LogicalOrArray property) (dacapo.experiments.datasplits.datasets.arrays.MissingAnnotationsMask property) (dacapo.experiments.datasplits.datasets.arrays.OnesArray property) (dacapo.experiments.datasplits.datasets.arrays.ResampledArray property) (dacapo.experiments.datasplits.datasets.arrays.ZarrArray property) axes (dacapo.experiments.datasplits.datasets.arrays.Array property) (dacapo.experiments.datasplits.datasets.arrays.BinarizeArray property) (dacapo.experiments.datasplits.datasets.arrays.ConcatArray property) (dacapo.experiments.datasplits.datasets.arrays.CropArray property) (dacapo.experiments.datasplits.datasets.arrays.IntensitiesArray property) (dacapo.experiments.datasplits.datasets.arrays.LogicalOrArray property) (dacapo.experiments.datasplits.datasets.arrays.MissingAnnotationsMask property) (dacapo.experiments.datasplits.datasets.arrays.OnesArray property) (dacapo.experiments.datasplits.datasets.arrays.ResampledArray property) (dacapo.experiments.datasplits.datasets.arrays.ZarrArray property) B BinarizeArray (class in dacapo.experiments.datasplits.datasets.arrays) build_batch_provider() (dacapo.experiments.trainers.GunpowderTrainer method) (dacapo.experiments.trainers.Trainer method) C can_train() (dacapo.experiments.trainers.GunpowderTrainer method) (dacapo.experiments.trainers.Trainer method) CNNectomeUNet (class in dacapo.experiments.architectures) CNNectomeUNetConfig (class in dacapo.experiments.architectures) ConcatArray (class in dacapo.experiments.datasplits.datasets.arrays) create_from_array_identifier() (dacapo.experiments.datasplits.datasets.arrays.ZarrArray class method) create_optimizer() (dacapo.experiments.trainers.GunpowderTrainer method) (dacapo.experiments.trainers.Trainer method) CropArray (class in dacapo.experiments.datasplits.datasets.arrays) D dacapo module, [1] data (dacapo.experiments.datasplits.datasets.arrays.Array property) (dacapo.experiments.datasplits.datasets.arrays.BinarizeArray property) (dacapo.experiments.datasplits.datasets.arrays.ConcatArray property) (dacapo.experiments.datasplits.datasets.arrays.CropArray property) (dacapo.experiments.datasplits.datasets.arrays.IntensitiesArray property) (dacapo.experiments.datasplits.datasets.arrays.LogicalOrArray property) (dacapo.experiments.datasplits.datasets.arrays.MissingAnnotationsMask property) (dacapo.experiments.datasplits.datasets.arrays.OnesArray property) (dacapo.experiments.datasplits.datasets.arrays.ResampledArray property) (dacapo.experiments.datasplits.datasets.arrays.ZarrArray property) Dataset (class in dacapo.experiments.datasplits.datasets) DataSplit (class in dacapo.experiments.datasplits) datasplit_type (dacapo.experiments.datasplits.TrainValidateDataSplitConfig attribute) dims (dacapo.experiments.datasplits.datasets.arrays.Array property) (dacapo.experiments.datasplits.datasets.arrays.BinarizeArray property) (dacapo.experiments.datasplits.datasets.arrays.ConcatArray property) (dacapo.experiments.datasplits.datasets.arrays.CropArray property) (dacapo.experiments.datasplits.datasets.arrays.IntensitiesArray property) (dacapo.experiments.datasplits.datasets.arrays.LogicalOrArray property) (dacapo.experiments.datasplits.datasets.arrays.MissingAnnotationsMask property) (dacapo.experiments.datasplits.datasets.arrays.OnesArray property) (dacapo.experiments.datasplits.datasets.arrays.ResampledArray property) (dacapo.experiments.datasplits.datasets.arrays.ZarrArray property) DistanceTask (class in dacapo.experiments.tasks) DistanceTaskConfig (class in dacapo.experiments.tasks) dtype (dacapo.experiments.datasplits.datasets.arrays.Array property) (dacapo.experiments.datasplits.datasets.arrays.BinarizeArray property) (dacapo.experiments.datasplits.datasets.arrays.ConcatArray property) (dacapo.experiments.datasplits.datasets.arrays.CropArray property) (dacapo.experiments.datasplits.datasets.arrays.IntensitiesArray property) (dacapo.experiments.datasplits.datasets.arrays.LogicalOrArray property) (dacapo.experiments.datasplits.datasets.arrays.MissingAnnotationsMask property) (dacapo.experiments.datasplits.datasets.arrays.OnesArray property) (dacapo.experiments.datasplits.datasets.arrays.ResampledArray property) (dacapo.experiments.datasplits.datasets.arrays.ZarrArray property) E eval_shape_increase (dacapo.experiments.architectures.Architecture property) (dacapo.experiments.architectures.CNNectomeUNet property) F forward() (dacapo.experiments.architectures.CNNectomeUNet method) G get_validation_scores() (dacapo.experiments.Run static method) GunpowderTrainer (class in dacapo.experiments.trainers) GunpowderTrainerConfig (class in dacapo.experiments.trainers) I input_shape (dacapo.experiments.architectures.Architecture property) (dacapo.experiments.architectures.CNNectomeUNet property) IntensitiesArray (class in dacapo.experiments.datasplits.datasets.arrays) iterate() (dacapo.experiments.trainers.GunpowderTrainer method) (dacapo.experiments.trainers.Trainer method) L LogicalOrArray (class in dacapo.experiments.datasplits.datasets.arrays) M MissingAnnotationsMask (class in dacapo.experiments.datasplits.datasets.arrays) module dacapo, [1] N num_channels (dacapo.experiments.datasplits.datasets.arrays.Array property) (dacapo.experiments.datasplits.datasets.arrays.BinarizeArray property) (dacapo.experiments.datasplits.datasets.arrays.ConcatArray property) (dacapo.experiments.datasplits.datasets.arrays.CropArray property) (dacapo.experiments.datasplits.datasets.arrays.IntensitiesArray property) (dacapo.experiments.datasplits.datasets.arrays.LogicalOrArray property) (dacapo.experiments.datasplits.datasets.arrays.MissingAnnotationsMask property) (dacapo.experiments.datasplits.datasets.arrays.OnesArray property) (dacapo.experiments.datasplits.datasets.arrays.ResampledArray property) (dacapo.experiments.datasplits.datasets.arrays.ZarrArray property) num_in_channels (dacapo.experiments.architectures.Architecture property) (dacapo.experiments.architectures.CNNectomeUNet property) num_out_channels (dacapo.experiments.architectures.Architecture property) (dacapo.experiments.architectures.CNNectomeUNet property) O OneHotTask (class in dacapo.experiments.tasks) OneHotTaskConfig (class in dacapo.experiments.tasks) OnesArray (class in dacapo.experiments.datasplits.datasets.arrays) R RawGTDataset (class in dacapo.experiments.datasplits.datasets) ResampledArray (class in dacapo.experiments.datasplits.datasets.arrays) roi (dacapo.experiments.datasplits.datasets.arrays.Array property) (dacapo.experiments.datasplits.datasets.arrays.BinarizeArray property) (dacapo.experiments.datasplits.datasets.arrays.ConcatArray property) (dacapo.experiments.datasplits.datasets.arrays.CropArray property) (dacapo.experiments.datasplits.datasets.arrays.IntensitiesArray property) (dacapo.experiments.datasplits.datasets.arrays.LogicalOrArray property) (dacapo.experiments.datasplits.datasets.arrays.MissingAnnotationsMask property) (dacapo.experiments.datasplits.datasets.arrays.OnesArray property) (dacapo.experiments.datasplits.datasets.arrays.ResampledArray property) (dacapo.experiments.datasplits.datasets.arrays.ZarrArray property) Run (class in dacapo.experiments) RunConfig (class in dacapo.experiments) T Task (class in dacapo.experiments.tasks) task_type (dacapo.experiments.tasks.AffinitiesTaskConfig attribute) (dacapo.experiments.tasks.DistanceTaskConfig attribute) (dacapo.experiments.tasks.OneHotTaskConfig attribute) Trainer (class in dacapo.experiments.trainers) trainer_type (dacapo.experiments.trainers.GunpowderTrainerConfig attribute) TrainValidateDataSplit (class in dacapo.experiments.datasplits) TrainValidateDataSplitConfig (class in dacapo.experiments.datasplits) V voxel_size (dacapo.experiments.datasplits.datasets.arrays.Array property) (dacapo.experiments.datasplits.datasets.arrays.BinarizeArray property) (dacapo.experiments.datasplits.datasets.arrays.ConcatArray property) (dacapo.experiments.datasplits.datasets.arrays.CropArray property) (dacapo.experiments.datasplits.datasets.arrays.IntensitiesArray property) (dacapo.experiments.datasplits.datasets.arrays.LogicalOrArray property) (dacapo.experiments.datasplits.datasets.arrays.MissingAnnotationsMask property) (dacapo.experiments.datasplits.datasets.arrays.OnesArray property) (dacapo.experiments.datasplits.datasets.arrays.ResampledArray property) (dacapo.experiments.datasplits.datasets.arrays.ZarrArray property) W writable (dacapo.experiments.datasplits.datasets.arrays.Array property) (dacapo.experiments.datasplits.datasets.arrays.BinarizeArray property) (dacapo.experiments.datasplits.datasets.arrays.ConcatArray property) (dacapo.experiments.datasplits.datasets.arrays.CropArray property) (dacapo.experiments.datasplits.datasets.arrays.IntensitiesArray property) (dacapo.experiments.datasplits.datasets.arrays.LogicalOrArray property) (dacapo.experiments.datasplits.datasets.arrays.MissingAnnotationsMask property) (dacapo.experiments.datasplits.datasets.arrays.OnesArray property) (dacapo.experiments.datasplits.datasets.arrays.ResampledArray property) (dacapo.experiments.datasplits.datasets.arrays.ZarrArray property) Z ZarrArray (class in dacapo.experiments.datasplits.datasets.arrays)