Motile Napari Plugin

A plugin for tracking with motile in napari. Motile is a library that makes it easy to solve tracking problems using optimization by framing the task as an Integer Linear Program (ILP). See the motile documentation for more details on the concepts and method.

• Getting started with the motile plugin
  • Installation
  • Tutorial video
  • Input data
  • Plugin widgets
  • Running tracking
  • Viewing and editing run results
• Tracking with motile
  • Motile Parameters
    • Hyperparameters
    • Constant Costs
    • Attribute weights
  • Run Viewer
• Tree View
  • Usage Overview
  • Viewing Externally Generated Tracks
• Editing Tracks
  • Usage Overview
  • Editing nodes
    • Deleting nodes
    • Adding nodes
    • Updating nodes
  • Editing edges
    • Deleting edges
    • Adding an edge
  • Undoing and redoing actions
• Key bindings and Mouse Functions
  • Napari viewer and layer key bindings and mouse functions
  • Tree view key and mouse functions
  • Key bindings for editing the tracks
  • Key bindings tutorial video
• API Reference
  • menus
    • Submodules
    • Classes
    • Package Contents
  • backend
    • Submodules
    • Classes
    • Functions
    • Package Contents
  • load_tracks
    • Functions
    • Module Contents
  • motile_plugin
    • Submodules
    • Attributes
    • Package Contents
  • relabel_segmentation
    • Functions
    • Module Contents