test_geff_import
================

.. py:module:: test_geff_import

.. autoapi-nested-parse::

   Tests for GEFF import in motile_tracker using funtracks.



Classes
-------

.. autoapisummary::

   test_geff_import.TestGeffImportBasic
   test_geff_import.TestGeffImportWithSegmentation
   test_geff_import.TestGeffImportWithFeatures
   test_geff_import.TestGeffImportValidation


Functions
---------

.. autoapisummary::

   test_geff_import.simple_geff_2d
   test_geff_import.simple_geff_3d


Module Contents
---------------

.. py:function:: simple_geff_2d()

   Create a simple 2D GEFF dataset for testing.


.. py:function:: simple_geff_3d()

   Create a simple 3D GEFF dataset for testing.


.. py:class:: TestGeffImportBasic

   Test basic GEFF import functionality.


   .. py:method:: test_import_2d_geff(simple_geff_2d)

      Test importing a 2D GEFF dataset.



   .. py:method:: test_import_3d_geff(simple_geff_3d)

      Test importing a 3D GEFF dataset.



   .. py:method:: test_import_with_scale(simple_geff_2d)

      Test that scale is correctly applied.



   .. py:method:: test_node_attributes_imported(simple_geff_2d)

      Test that node attributes are correctly imported.



.. py:class:: TestGeffImportWithSegmentation

   Test GEFF import with segmentation.


   .. py:method:: test_import_with_segmentation(simple_geff_2d, tmp_path)

      Test importing GEFF with segmentation.



   .. py:method:: test_segmentation_relabeling(simple_geff_2d, tmp_path)

      Test that segmentation is relabeled from seg_id to node_id.



.. py:class:: TestGeffImportWithFeatures

   Test GEFF import with feature loading and computation.


   .. py:method:: test_load_feature_from_geff(tmp_path)

      Test loading a feature directly from GEFF.



   .. py:method:: test_recompute_feature_from_segmentation(tmp_path)

      Test recomputing a feature from segmentation.



.. py:class:: TestGeffImportValidation

   Test validation and error handling in GEFF import.


   .. py:method:: test_missing_required_attribute(simple_geff_2d)

      Test that missing required attributes raise an error.



   .. py:method:: test_duplicate_name_map_values(simple_geff_2d)

      Test that duplicate values in name_map raise an error.