motile_plugin.layers.track_labels
Classes
Extended labels layer that holds the track information and emits and responds to dynamics visualization signals |
Functions
Generates a label colormap with three possible opacity values (0 for invisibible labels, 0.6 for visible labels, and 1 for selected labels) |
Module Contents
- motile_plugin.layers.track_labels.create_selection_label_cmap(color_dict_rgb: Dict, visible: List[int] | str, highlighted: List[int]) napari.utils.DirectLabelColormap
Generates a label colormap with three possible opacity values (0 for invisibible labels, 0.6 for visible labels, and 1 for selected labels)
- class motile_plugin.layers.track_labels.TrackLabels(viewer: napari.Viewer, data: numpy.array, name: str, colormap: napari.utils.CyclicLabelColormap, tracks: motile_plugin.core.Tracks, opacity: float, selected_nodes: motile_plugin.utils.node_selection.NodeSelectionList, scale: tuple)
Bases:
napari.layers.LabelsExtended labels layer that holds the track information and emits and responds to dynamics visualization signals
- nodes
- props
- viewer
- selected_nodes
- tracks
- base_label_color_dict
- create_label_color_dict(labels: List[int], colormap: napari.utils.CyclicLabelColormap) Dict
Extract the label colors to generate a base colormap, but keep opacity at 0
- update_label_colormap(visible: list[int] | str) None
Updates the opacity of the label colormap to highlight the selected label and optionally hide cells not belonging to the current lineage