Motile Plugin
Getting started with the motile plugin
Key bindings and Mouse Functions
Tree View
API Reference
Motile Plugin
Index
Index
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A
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B
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C
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D
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E
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F
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G
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
_
__getitem__() (node_selection.NodeSelectionList method)
__len__() (node_selection.NodeSelectionList method)
__version__ (in module motile_plugin)
_back_to_edit_widget() (motile_plugin.widgets.motile.run_viewer.RunViewer method)
_center_view() (motile_plugin.widgets.tracks_view.tree_widget.TreePlot method)
_create_pyqtgraph_content() (motile_plugin.widgets.tracks_view.tree_widget.TreePlot method)
_emit_run() (motile_plugin.widgets.motile.run_viewer.RunViewer method)
_export_tracks_dialog() (motile_plugin.widgets.motile.run_viewer.RunViewer method)
_generate_tracks() (motile_plugin.widgets.motile.motile_widget.MotileWidget method)
(motile_plugin.widgets.MotileWidget method)
_labels_layer_widget() (motile_plugin.widgets.motile.run_editor.RunEditor method)
_list (node_selection.NodeSelectionList attribute)
_load_array() (motile_plugin.backend.motile_run.MotileRun static method)
(motile_plugin.backend.MotileRun static method)
_load_list() (motile_plugin.backend.motile_run.MotileRun static method)
(motile_plugin.backend.MotileRun static method)
_load_params() (motile_plugin.backend.motile_run.MotileRun static method)
(motile_plugin.backend.MotileRun static method)
_load_tracks_graph() (motile_plugin.backend.motile_run.MotileRun static method)
(motile_plugin.backend.MotileRun static method)
_make_id() (motile_plugin.backend.motile_run.MotileRun method)
(motile_plugin.backend.MotileRun method)
_on_click() (motile_plugin.widgets.tracks_view.tree_widget.TreePlot method)
_on_solve_complete() (motile_plugin.widgets.motile.motile_widget.MotileWidget method)
(motile_plugin.widgets.MotileWidget method)
_on_solver_event() (motile_plugin.widgets.motile.motile_widget.MotileWidget method)
(motile_plugin.widgets.MotileWidget method)
_param_label_widget() (motile_plugin.widgets.motile.params_editor.EditableParam method)
(motile_plugin.widgets.motile.params_editor.OptionalEditableParam method)
_params_group() (motile_plugin.widgets.motile.params_editor.SolverParamsEditor method)
(motile_plugin.widgets.motile.params_viewer.SolverParamsViewer method)
_plot_widget() (motile_plugin.widgets.motile.run_viewer.RunViewer method)
_pos (motile_plugin.widgets.tracks_view.tree_widget.TreePlot attribute)
_progress_widget() (motile_plugin.widgets.motile.run_viewer.RunViewer method)
_run_widget() (motile_plugin.widgets.motile.run_editor.RunEditor method)
_save_and_export_widget() (motile_plugin.widgets.motile.run_viewer.RunViewer method)
_save_array() (motile_plugin.backend.motile_run.MotileRun method)
(motile_plugin.backend.MotileRun method)
_save_dialog() (motile_plugin.widgets.motile.run_viewer.RunViewer method)
_save_list() (motile_plugin.backend.motile_run.MotileRun method)
(motile_plugin.backend.MotileRun method)
_save_params() (motile_plugin.backend.motile_run.MotileRun method)
(motile_plugin.backend.MotileRun method)
_save_tracks_graph() (motile_plugin.backend.motile_run.MotileRun method)
(motile_plugin.backend.MotileRun method)
_selection_changed() (motile_plugin.widgets.motile.runs_list.RunsList method)
_set_feature() (motile_plugin.widgets.tracks_view.tree_view_feature_widget.TreeViewFeatureWidget method)
(motile_plugin.widgets.tracks_view.tree_widget.TreeWidget method)
(motile_plugin.widgets.TreeWidget method)
_set_mode() (motile_plugin.widgets.tracks_view.tree_view_mode_widget.TreeViewModeWidget method)
(motile_plugin.widgets.tracks_view.tree_widget.TreeWidget method)
(motile_plugin.widgets.TreeWidget method)
_set_solver_label() (motile_plugin.widgets.motile.run_viewer.RunViewer method)
_title_widget() (motile_plugin.widgets.motile.motile_widget.MotileWidget method)
(motile_plugin.widgets.MotileWidget method)
_toggle_display_mode() (motile_plugin.widgets.tracks_view.tree_view_mode_widget.TreeViewModeWidget method)
_toggle_feature_mode() (motile_plugin.widgets.tracks_view.tree_view_feature_widget.TreeViewFeatureWidget method)
_unpack_id() (motile_plugin.backend.motile_run.MotileRun static method)
(motile_plugin.backend.MotileRun static method)
_update_lineage_df() (motile_plugin.widgets.tracks_view.tree_widget.TreeWidget method)
(motile_plugin.widgets.TreeWidget method)
_update_selected() (motile_plugin.widgets.tracks_view.tree_widget.TreeWidget method)
(motile_plugin.widgets.TreeWidget method)
_update_selection() (motile_plugin.layers.track_points.TrackPoints method)
_update_track_data() (motile_plugin.widgets.tracks_view.tree_widget.TreeWidget method)
(motile_plugin.widgets.TreeWidget method)
_update_viewed_data() (motile_plugin.widgets.tracks_view.tree_widget.TreePlot method)
A
add() (node_selection.NodeSelectionList method)
add_napari_layers() (motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer method)
(motile_plugin.widgets.TracksViewer method)
add_run() (motile_plugin.widgets.motile.runs_list.RunsList method)
adj (motile_plugin.widgets.tracks_view.tree_widget.TreePlot attribute)
appear_cost (motile_plugin.backend.solver_params.SolverParams attribute)
(motile_plugin.backend.SolverParams attribute)
B
base_label_color_dict (motile_plugin.layers.track_labels.TrackLabels attribute)
button_group (motile_plugin.widgets.tracks_view.tree_view_feature_widget.TreeViewFeatureWidget attribute)
(motile_plugin.widgets.tracks_view.tree_view_mode_widget.TreeViewModeWidget attribute)
C
change_feature (motile_plugin.widgets.tracks_view.tree_view_feature_widget.TreeViewFeatureWidget attribute)
change_mode (motile_plugin.widgets.tracks_view.tree_view_mode_widget.TreeViewModeWidget attribute)
colormap (motile_plugin.layers.track_points.TrackPoints attribute)
(motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer attribute)
(motile_plugin.widgets.TracksViewer attribute)
colors (motile_plugin.layers.track_points.TrackPoints attribute)
construct_solver() (in module motile_plugin.backend.solve)
CONTINUE (motile_plugin.core.node_type.NodeType attribute)
(motile_plugin.core.NodeType attribute)
convert_to_zarr() (in module motile_plugin.example_data)
create_label_color_dict() (motile_plugin.layers.track_labels.TrackLabels method)
create_selection_label_cmap() (in module motile_plugin.layers.track_labels)
CustomViewBox (class in motile_plugin.widgets.tracks_view.tree_widget)
D
datetime (motile_plugin.widgets.motile.runs_list.RunButton attribute)
delete (motile_plugin.widgets.motile.runs_list.RunButton attribute)
delete() (motile_plugin.backend.motile_run.MotileRun method)
(motile_plugin.backend.MotileRun method)
display_box (motile_plugin.widgets.tracks_view.tree_view_feature_widget.TreeViewFeatureWidget attribute)
(motile_plugin.widgets.tracks_view.tree_view_mode_widget.TreeViewModeWidget attribute)
display_layout (motile_plugin.widgets.tracks_view.tree_view_feature_widget.TreeViewFeatureWidget attribute)
(motile_plugin.widgets.tracks_view.tree_view_mode_widget.TreeViewModeWidget attribute)
distance_cost (motile_plugin.backend.solver_params.SolverParams attribute)
(motile_plugin.backend.SolverParams attribute)
division_cost (motile_plugin.backend.solver_params.SolverParams attribute)
(motile_plugin.backend.SolverParams attribute)
down_button (motile_plugin.widgets.tracks_view.navigation_widget.NavigationWidget attribute)
download_ctc_dataset() (in module motile_plugin.example_data)
dtype (motile_plugin.widgets.motile.params_editor.EditableParam attribute)
(motile_plugin.widgets.motile.params_viewer.ParamView attribute)
E
edge_selection_cost (motile_plugin.backend.solver_params.SolverParams attribute)
(motile_plugin.backend.SolverParams attribute)
edit_run (motile_plugin.widgets.motile.run_viewer.RunViewer attribute)
edit_run() (motile_plugin.widgets.motile.motile_widget.MotileWidget method)
(motile_plugin.widgets.MotileWidget method)
edit_run_widget (motile_plugin.widgets.motile.motile_widget.MotileWidget attribute)
(motile_plugin.widgets.MotileWidget attribute)
EditableParam (class in motile_plugin.widgets.motile.params_editor)
EditableParamValue (class in motile_plugin.widgets.motile.param_values)
emit_run() (motile_plugin.widgets.motile.run_editor.RunEditor method)
END (motile_plugin.core.node_type.NodeType attribute)
(motile_plugin.core.NodeType attribute)
export_tracks() (motile_plugin.widgets.motile.run_viewer.RunViewer method)
export_tracks_dialog (motile_plugin.widgets.motile.run_viewer.RunViewer attribute)
extract_lineage_tree() (in module tree_widget_utils)
extract_sorted_tracks() (in module tree_widget_utils)
F
feature (motile_plugin.widgets.tracks_view.navigation_widget.NavigationWidget attribute)
(motile_plugin.widgets.tracks_view.tree_view_feature_widget.TreeViewFeatureWidget attribute)
(motile_plugin.widgets.tracks_view.tree_widget.TreePlot attribute)
(motile_plugin.widgets.tracks_view.tree_widget.TreeWidget attribute)
(motile_plugin.widgets.TreeWidget attribute)
feature_widget (motile_plugin.widgets.tracks_view.tree_widget.TreeWidget attribute)
(motile_plugin.widgets.TreeWidget attribute)
field (motile_plugin.widgets.motile.params_editor.EditableParam attribute)
(motile_plugin.widgets.motile.params_viewer.ParamView attribute)
file_dialog (motile_plugin.widgets.motile.runs_list.RunsList attribute)
filter_visible_nodes() (motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer method)
(motile_plugin.widgets.TracksViewer method)
flip() (node_selection.NodeSelectionList method)
Fluo_N2DL_HeLa() (in module motile_plugin.example_data)
G
g (motile_plugin.widgets.tracks_view.tree_widget.TreePlot attribute)
gap_plot (motile_plugin.widgets.motile.run_viewer.RunViewer attribute)
gaps (motile_plugin.backend.motile_run.MotileRun attribute)
(motile_plugin.backend.MotileRun attribute)
GAPS_FILENAME (in module motile_plugin.backend.motile_run)
generate_tracks_btn (motile_plugin.widgets.motile.run_editor.RunEditor attribute)
get_area() (motile_plugin.core.Tracks method)
(motile_plugin.core.tracks.Tracks method)
get_input_layer() (motile_plugin.widgets.motile.run_editor.RunEditor method)
get_instance() (motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer class method)
(motile_plugin.widgets.TracksViewer class method)
get_location() (motile_plugin.core.Tracks method)
(motile_plugin.core.tracks.Tracks method)
get_next_track_node() (motile_plugin.widgets.tracks_view.navigation_widget.NavigationWidget method)
get_predecessor() (motile_plugin.widgets.tracks_view.navigation_widget.NavigationWidget method)
get_run() (motile_plugin.widgets.motile.run_editor.RunEditor method)
get_successor() (motile_plugin.widgets.tracks_view.navigation_widget.NavigationWidget method)
get_symbols() (motile_plugin.layers.track_points.TrackPoints method)
get_time() (motile_plugin.core.Tracks method)
(motile_plugin.core.tracks.Tracks method)
get_value() (motile_plugin.widgets.motile.param_values.EditableParamValue method)
(motile_plugin.widgets.motile.param_values.StaticParamValue method)
graph (motile_plugin.core.Tracks attribute)
(motile_plugin.core.tracks.Tracks attribute)
(motile_plugin.widgets.tracks_view.tree_widget.TreeWidget attribute)
(motile_plugin.widgets.TreeWidget attribute)
I
icon (motile_plugin.widgets.motile.runs_list.RunButton attribute)
IN_POINTS_FILEANME (in module motile_plugin.backend.motile_run)
IN_SEG_FILEANME (in module motile_plugin.backend.motile_run)
input_points (motile_plugin.backend.motile_run.MotileRun attribute)
(motile_plugin.backend.MotileRun attribute)
input_segmentation (motile_plugin.backend.motile_run.MotileRun attribute)
(motile_plugin.backend.MotileRun attribute)
iou_cost (motile_plugin.backend.solver_params.SolverParams attribute)
(motile_plugin.backend.SolverParams attribute)
iou_row (motile_plugin.widgets.motile.params_editor.SolverParamsEditor attribute)
K
keyPressEvent() (motile_plugin.widgets.tracks_view.tree_widget.TreeWidget method)
(motile_plugin.widgets.TreeWidget method)
keyReleaseEvent() (motile_plugin.widgets.tracks_view.tree_widget.TreeWidget method)
(motile_plugin.widgets.TreeWidget method)
L
layer_selection_box (motile_plugin.widgets.motile.run_editor.RunEditor attribute)
layout (motile_plugin.widgets.motile.params_editor.EditableParam attribute)
(motile_plugin.widgets.motile.params_viewer.ParamView attribute)
(motile_plugin.widgets.motile.runs_list.RunButton attribute)
(motile_plugin.widgets.motile.runs_list.RunsList attribute)
(motile_plugin.widgets.tracks_view.navigation_widget.NavigationWidget attribute)
(motile_plugin.widgets.tracks_view.tree_view_feature_widget.TreeViewFeatureWidget attribute)
(motile_plugin.widgets.tracks_view.tree_view_mode_widget.TreeViewModeWidget attribute)
(motile_plugin.widgets.tracks_view.tree_widget.TreeWidget attribute)
(motile_plugin.widgets.TreeWidget attribute)
left_button (motile_plugin.widgets.tracks_view.navigation_widget.NavigationWidget attribute)
lineage_df (motile_plugin.widgets.tracks_view.navigation_widget.NavigationWidget attribute)
(motile_plugin.widgets.tracks_view.tree_widget.TreeWidget attribute)
(motile_plugin.widgets.TreeWidget attribute)
list_updated (node_selection.NodeSelectionList attribute)
load() (motile_plugin.backend.motile_run.MotileRun class method)
(motile_plugin.backend.MotileRun class method)
load_button (motile_plugin.widgets.motile.runs_list.RunsList attribute)
load_run() (motile_plugin.widgets.motile.runs_list.RunsList method)
load_tracks
module
logger (in module motile_plugin.backend.solve)
(in module motile_plugin.example_data)
(in module motile_plugin.widgets.motile.motile_widget)
(in module motile_plugin.widgets.motile.run_editor)
M
main_layout (motile_plugin.widgets.motile.motile_widget.MotileWidget attribute)
(motile_plugin.widgets.motile.params_editor.SolverParamsEditor attribute)
(motile_plugin.widgets.motile.params_viewer.SolverParamsViewer attribute)
(motile_plugin.widgets.motile.run_editor.RunEditor attribute)
(motile_plugin.widgets.motile.run_viewer.RunViewer attribute)
(motile_plugin.widgets.MotileWidget attribute)
main_widget (motile_plugin.widgets.motile.motile_widget.MotileWidget attribute)
(motile_plugin.widgets.MotileWidget attribute)
max_children (motile_plugin.backend.solver_params.SolverParams attribute)
(motile_plugin.backend.SolverParams attribute)
max_edge_distance (motile_plugin.backend.solver_params.SolverParams attribute)
(motile_plugin.backend.SolverParams attribute)
max_val (motile_plugin.widgets.motile.param_values.EditableParamValue attribute)
min_val (motile_plugin.widgets.motile.param_values.EditableParamValue attribute)
mode (motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer attribute)
(motile_plugin.widgets.tracks_view.tree_view_mode_widget.TreeViewModeWidget attribute)
(motile_plugin.widgets.tracks_view.tree_widget.TreeWidget attribute)
(motile_plugin.widgets.TracksViewer attribute)
(motile_plugin.widgets.TreeWidget attribute)
mode_widget (motile_plugin.widgets.tracks_view.tree_widget.TreeWidget attribute)
(motile_plugin.widgets.TreeWidget attribute)
model_config (motile_plugin.backend.motile_run.MotileRun attribute)
(motile_plugin.backend.MotileRun attribute)
(motile_plugin.core.Tracks attribute)
(motile_plugin.core.tracks.Tracks attribute)
module
load_tracks
motile_plugin
motile_plugin.backend
motile_plugin.backend.motile_run
motile_plugin.backend.solve
motile_plugin.backend.solver_params
motile_plugin.core
motile_plugin.core.node_type
motile_plugin.core.tracks
motile_plugin.example_data
motile_plugin.layers
motile_plugin.layers.track_graph
motile_plugin.layers.track_labels
motile_plugin.layers.track_points
motile_plugin.widgets
motile_plugin.widgets.motile
motile_plugin.widgets.motile.motile_widget
motile_plugin.widgets.motile.param_values
motile_plugin.widgets.motile.params_editor
motile_plugin.widgets.motile.params_viewer
motile_plugin.widgets.motile.run_editor
motile_plugin.widgets.motile.run_viewer
motile_plugin.widgets.motile.runs_list
motile_plugin.widgets.tracks_view
motile_plugin.widgets.tracks_view.navigation_widget
motile_plugin.widgets.tracks_view.tracks_viewer
motile_plugin.widgets.tracks_view.tree_view_feature_widget
motile_plugin.widgets.tracks_view.tree_view_mode_widget
motile_plugin.widgets.tracks_view.tree_widget
node_selection
relabel_segmentation
tree_widget_utils
motile_plugin
module
motile_plugin.backend
module
motile_plugin.backend.motile_run
module
motile_plugin.backend.solve
module
motile_plugin.backend.solver_params
module
motile_plugin.core
module
motile_plugin.core.node_type
module
motile_plugin.core.tracks
module
motile_plugin.example_data
module
motile_plugin.layers
module
motile_plugin.layers.track_graph
module
motile_plugin.layers.track_labels
module
motile_plugin.layers.track_points
module
motile_plugin.widgets
module
motile_plugin.widgets.motile
module
motile_plugin.widgets.motile.motile_widget
module
motile_plugin.widgets.motile.param_values
module
motile_plugin.widgets.motile.params_editor
module
motile_plugin.widgets.motile.params_viewer
module
motile_plugin.widgets.motile.run_editor
module
motile_plugin.widgets.motile.run_viewer
module
motile_plugin.widgets.motile.runs_list
module
motile_plugin.widgets.tracks_view
module
motile_plugin.widgets.tracks_view.navigation_widget
module
motile_plugin.widgets.tracks_view.tracks_viewer
module
motile_plugin.widgets.tracks_view.tree_view_feature_widget
module
motile_plugin.widgets.tracks_view.tree_view_mode_widget
module
motile_plugin.widgets.tracks_view.tree_widget
module
MotileRun (class in motile_plugin.backend)
(class in motile_plugin.backend.motile_run)
MotileWidget (class in motile_plugin.widgets)
(class in motile_plugin.widgets.motile.motile_widget)
mouseClickEvent() (motile_plugin.widgets.tracks_view.tree_widget.CustomViewBox method)
mouseDragEvent() (motile_plugin.widgets.tracks_view.tree_widget.CustomViewBox method)
move() (motile_plugin.widgets.tracks_view.navigation_widget.NavigationWidget method)
N
navigation_box (motile_plugin.widgets.tracks_view.navigation_widget.NavigationWidget attribute)
navigation_layout (motile_plugin.widgets.tracks_view.navigation_widget.NavigationWidget attribute)
navigation_widget (motile_plugin.widgets.tracks_view.tree_widget.TreeWidget attribute)
(motile_plugin.widgets.TreeWidget attribute)
NavigationWidget (class in motile_plugin.widgets.tracks_view.navigation_widget)
negative (motile_plugin.widgets.motile.params_editor.EditableParam attribute)
new_params (motile_plugin.widgets.motile.params_editor.SolverParamsEditor attribute)
(motile_plugin.widgets.motile.params_viewer.SolverParamsViewer attribute)
new_run() (motile_plugin.widgets.motile.run_editor.RunEditor method)
node_clicked (motile_plugin.widgets.tracks_view.tree_widget.TreePlot attribute)
node_ids (motile_plugin.widgets.tracks_view.tree_widget.TreePlot attribute)
node_index_dict (motile_plugin.layers.track_points.TrackPoints attribute)
node_selection
module
nodes (motile_plugin.layers.track_labels.TrackLabels attribute)
(motile_plugin.layers.track_points.TrackPoints attribute)
NodeSelectionList (class in node_selection)
NodeType (class in motile_plugin.core)
(class in motile_plugin.core.node_type)
O
OptionalEditableParam (class in motile_plugin.widgets.motile.params_editor)
OUT_SEG_FILEANME (in module motile_plugin.backend.motile_run)
outline_pen (motile_plugin.widgets.tracks_view.tree_widget.TreePlot attribute)
P
panel (motile_plugin.widgets.tracks_view.tree_widget.TreeWidget attribute)
(motile_plugin.widgets.TreeWidget attribute)
panel_layout (motile_plugin.widgets.tracks_view.tree_widget.TreeWidget attribute)
(motile_plugin.widgets.TreeWidget attribute)
param_categories (motile_plugin.widgets.motile.params_editor.SolverParamsEditor attribute)
(motile_plugin.widgets.motile.params_viewer.SolverParamsViewer attribute)
param_label (motile_plugin.widgets.motile.params_editor.EditableParam attribute)
(motile_plugin.widgets.motile.params_viewer.ParamView attribute)
param_name (motile_plugin.widgets.motile.params_editor.EditableParam attribute)
(motile_plugin.widgets.motile.params_viewer.ParamView attribute)
param_value (motile_plugin.widgets.motile.params_editor.EditableParam attribute)
(motile_plugin.widgets.motile.params_viewer.ParamView attribute)
PARAMS_FILENAME (in module motile_plugin.backend.motile_run)
params_widget (motile_plugin.widgets.motile.run_viewer.RunViewer attribute)
ParamView (class in motile_plugin.widgets.motile.params_viewer)
pen (motile_plugin.widgets.tracks_view.tree_widget.TreePlot attribute)
points (motile_plugin.layers.track_points.TrackPoints attribute)
points_layer (motile_plugin.widgets.tracks_view.tracks_viewer.TracksLayerGroup attribute)
pos_attr (motile_plugin.core.Tracks attribute)
(motile_plugin.core.tracks.Tracks attribute)
props (motile_plugin.layers.track_labels.TrackLabels attribute)
R
read_ctc_dataset() (in module motile_plugin.example_data)
relabel_segmentation
module
relabel_segmentation() (in module relabel_segmentation)
remove_layers (motile_plugin.widgets.motile.motile_widget.MotileWidget attribute)
(motile_plugin.widgets.MotileWidget attribute)
remove_napari_layer() (motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer method)
(motile_plugin.widgets.TracksViewer method)
remove_napari_layers() (motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer method)
(motile_plugin.widgets.TracksViewer method)
remove_run() (motile_plugin.widgets.motile.runs_list.RunsList method)
reset() (node_selection.NodeSelectionList method)
reset_progress() (motile_plugin.widgets.motile.run_viewer.RunViewer method)
reshape_labels() (motile_plugin.widgets.motile.run_editor.RunEditor method)
right_button (motile_plugin.widgets.tracks_view.navigation_widget.NavigationWidget attribute)
run (motile_plugin.widgets.motile.run_viewer.RunViewer attribute)
(motile_plugin.widgets.motile.runs_list.RunButton attribute)
run_list_widget (motile_plugin.widgets.motile.motile_widget.MotileWidget attribute)
(motile_plugin.widgets.MotileWidget attribute)
run_name (motile_plugin.backend.motile_run.MotileRun attribute)
(motile_plugin.backend.MotileRun attribute)
(motile_plugin.widgets.motile.run_editor.RunEditor attribute)
(motile_plugin.widgets.motile.runs_list.RunButton attribute)
RunButton (class in motile_plugin.widgets.motile.runs_list)
RunEditor (class in motile_plugin.widgets.motile.run_editor)
runs_list (motile_plugin.widgets.motile.runs_list.RunsList attribute)
RunsList (class in motile_plugin.widgets.motile.runs_list)
RunViewer (class in motile_plugin.widgets.motile.run_viewer)
S
save() (motile_plugin.backend.motile_run.MotileRun method)
(motile_plugin.backend.MotileRun method)
save_run() (motile_plugin.widgets.motile.run_viewer.RunViewer method)
save_run_dialog (motile_plugin.widgets.motile.run_viewer.RunViewer attribute)
scale (motile_plugin.backend.motile_run.MotileRun attribute)
(motile_plugin.backend.MotileRun attribute)
(motile_plugin.core.Tracks attribute)
(motile_plugin.core.tracks.Tracks attribute)
SCALE_FILENAME (in module motile_plugin.backend.motile_run)
seg_layer (motile_plugin.widgets.tracks_view.tracks_viewer.TracksLayerGroup attribute)
segmentation (motile_plugin.core.Tracks attribute)
(motile_plugin.core.tracks.Tracks attribute)
selected_nodes (motile_plugin.layers.track_labels.TrackLabels attribute)
(motile_plugin.layers.track_points.TrackPoints attribute)
(motile_plugin.widgets.tracks_view.navigation_widget.NavigationWidget attribute)
(motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer attribute)
(motile_plugin.widgets.tracks_view.tree_widget.TreeWidget attribute)
(motile_plugin.widgets.TracksViewer attribute)
(motile_plugin.widgets.TreeWidget attribute)
set_data() (motile_plugin.widgets.tracks_view.tree_widget.TreePlot method)
set_display_mode() (motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer method)
(motile_plugin.widgets.TracksViewer method)
set_napari_view() (motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer method)
(motile_plugin.widgets.TracksViewer method)
set_selection() (motile_plugin.widgets.tracks_view.tree_widget.TreePlot method)
set_view() (motile_plugin.widgets.tracks_view.tree_widget.TreePlot method)
show_all_radio (motile_plugin.widgets.tracks_view.tree_view_mode_widget.TreeViewModeWidget attribute)
show_area_radio (motile_plugin.widgets.tracks_view.tree_view_feature_widget.TreeViewFeatureWidget attribute)
show_lineage_radio (motile_plugin.widgets.tracks_view.tree_view_mode_widget.TreeViewModeWidget attribute)
show_tree_radio (motile_plugin.widgets.tracks_view.tree_view_feature_widget.TreeViewFeatureWidget attribute)
sizeHint() (motile_plugin.widgets.motile.runs_list.RunButton method)
sizes (motile_plugin.widgets.tracks_view.tree_widget.TreePlot attribute)
solve() (in module motile_plugin.backend.solve)
solve_with_motile() (motile_plugin.widgets.motile.motile_widget.MotileWidget method)
(motile_plugin.widgets.MotileWidget method)
solver_event_update() (motile_plugin.widgets.motile.run_viewer.RunViewer method)
solver_label (motile_plugin.widgets.motile.run_viewer.RunViewer attribute)
solver_params (motile_plugin.backend.motile_run.MotileRun attribute)
(motile_plugin.backend.MotileRun attribute)
(motile_plugin.widgets.motile.params_editor.SolverParamsEditor attribute)
(motile_plugin.widgets.motile.params_viewer.SolverParamsViewer attribute)
solver_params_widget (motile_plugin.widgets.motile.run_editor.RunEditor attribute)
solver_update (motile_plugin.widgets.motile.motile_widget.MotileWidget attribute)
(motile_plugin.widgets.MotileWidget attribute)
SolverParams (class in motile_plugin.backend)
(class in motile_plugin.backend.solver_params)
SolverParamsEditor (class in motile_plugin.widgets.motile.params_editor)
SolverParamsViewer (class in motile_plugin.widgets.motile.params_viewer)
sort_track_ids() (in module tree_widget_utils)
SPLIT (motile_plugin.core.node_type.NodeType attribute)
(motile_plugin.core.NodeType attribute)
STAMP_FORMAT (in module motile_plugin.backend.motile_run)
start_run (motile_plugin.widgets.motile.run_editor.RunEditor attribute)
StaticParamValue (class in motile_plugin.widgets.motile.param_values)
status (motile_plugin.backend.motile_run.MotileRun attribute)
(motile_plugin.backend.MotileRun attribute)
symbolBrush (motile_plugin.widgets.tracks_view.tree_widget.TreePlot attribute)
symbolmap (motile_plugin.layers.track_points.TrackPoints attribute)
(motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer attribute)
(motile_plugin.widgets.TracksViewer attribute)
symbols (motile_plugin.layers.track_points.TrackPoints attribute)
(motile_plugin.widgets.tracks_view.tree_widget.TreePlot attribute)
T
time (motile_plugin.backend.motile_run.MotileRun attribute)
(motile_plugin.backend.MotileRun attribute)
time_attr (motile_plugin.core.Tracks attribute)
(motile_plugin.core.tracks.Tracks attribute)
title (motile_plugin.widgets.motile.params_editor.EditableParam attribute)
(motile_plugin.widgets.motile.params_viewer.ParamView attribute)
toggle_display_mode() (motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer method)
(motile_plugin.widgets.TracksViewer method)
toggle_enable() (motile_plugin.widgets.motile.params_editor.OptionalEditableParam method)
toggle_visible() (motile_plugin.widgets.motile.params_editor.OptionalEditableParam method)
track_df (motile_plugin.widgets.tracks_view.navigation_widget.NavigationWidget attribute)
(motile_plugin.widgets.tracks_view.tree_widget.TreeWidget attribute)
(motile_plugin.widgets.TreeWidget attribute)
track_ids (motile_plugin.layers.track_points.TrackPoints attribute)
TrackGraph (class in motile_plugin.layers.track_graph)
tracking_layers (motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer attribute)
(motile_plugin.widgets.TracksViewer attribute)
TrackLabels (class in motile_plugin.layers.track_labels)
TrackPoints (class in motile_plugin.layers.track_points)
Tracks (class in motile_plugin.core)
(class in motile_plugin.core.tracks)
tracks (motile_plugin.backend.motile_run.MotileRun attribute)
(motile_plugin.backend.MotileRun attribute)
(motile_plugin.layers.track_labels.TrackLabels attribute)
(motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer attribute)
(motile_plugin.widgets.TracksViewer attribute)
TRACKS_FILENAME (in module motile_plugin.backend.motile_run)
tracks_from_csv() (in module load_tracks)
tracks_layer (motile_plugin.widgets.tracks_view.tracks_viewer.TracksLayerGroup attribute)
tracks_layer_graph (motile_plugin.layers.track_graph.TrackGraph attribute)
tracks_updated (motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer attribute)
(motile_plugin.widgets.TracksViewer attribute)
tracks_viewer (motile_plugin.widgets.motile.motile_widget.MotileWidget attribute)
(motile_plugin.widgets.MotileWidget attribute)
(motile_plugin.widgets.tracks_view.tree_widget.TreeWidget attribute)
(motile_plugin.widgets.TreeWidget attribute)
TracksLayerGroup (class in motile_plugin.widgets.tracks_view.tracks_viewer)
TracksViewer (class in motile_plugin.widgets)
(class in motile_plugin.widgets.tracks_view.tracks_viewer)
tree_widget (motile_plugin.widgets.tracks_view.tree_widget.TreeWidget attribute)
(motile_plugin.widgets.TreeWidget attribute)
tree_widget_utils
module
TreePlot (class in motile_plugin.widgets.tracks_view.tree_widget)
TreeViewFeatureWidget (class in motile_plugin.widgets.tracks_view.tree_view_feature_widget)
TreeViewModeWidget (class in motile_plugin.widgets.tracks_view.tree_view_mode_widget)
TreeWidget (class in motile_plugin.widgets)
(class in motile_plugin.widgets.tracks_view.tree_widget)
U
up_button (motile_plugin.widgets.tracks_view.navigation_widget.NavigationWidget attribute)
update() (motile_plugin.widgets.tracks_view.tree_widget.TreePlot method)
update_from_params() (motile_plugin.widgets.motile.params_editor.EditableParam method)
(motile_plugin.widgets.motile.params_editor.OptionalEditableParam method)
(motile_plugin.widgets.motile.params_viewer.ParamView method)
update_label_colormap() (motile_plugin.layers.track_labels.TrackLabels method)
update_labels_layers() (motile_plugin.widgets.motile.run_editor.RunEditor method)
update_layer_selection() (motile_plugin.widgets.motile.run_editor.RunEditor method)
update_point_outline() (motile_plugin.layers.track_points.TrackPoints method)
update_run() (motile_plugin.widgets.motile.run_viewer.RunViewer method)
update_selection() (motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer method)
(motile_plugin.widgets.TracksViewer method)
update_track_visibility() (motile_plugin.layers.track_graph.TrackGraph method)
update_tracks() (motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer method)
(motile_plugin.widgets.TracksViewer method)
update_value() (motile_plugin.widgets.motile.param_values.EditableParamValue method)
(motile_plugin.widgets.motile.param_values.StaticParamValue method)
V
valueChanged (motile_plugin.widgets.motile.param_values.EditableParamValue attribute)
(motile_plugin.widgets.motile.param_values.StaticParamValue attribute)
view_direction (motile_plugin.widgets.tracks_view.navigation_widget.NavigationWidget attribute)
(motile_plugin.widgets.tracks_view.tree_widget.TreePlot attribute)
(motile_plugin.widgets.tracks_view.tree_widget.TreeWidget attribute)
(motile_plugin.widgets.TreeWidget attribute)
view_external_tracks() (motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer method)
(motile_plugin.widgets.TracksViewer method)
view_run (motile_plugin.widgets.motile.runs_list.RunsList attribute)
view_run() (motile_plugin.widgets.motile.motile_widget.MotileWidget method)
(motile_plugin.widgets.MotileWidget method)
view_run_widget (motile_plugin.widgets.motile.motile_widget.MotileWidget attribute)
(motile_plugin.widgets.MotileWidget attribute)
view_tracks (motile_plugin.widgets.motile.motile_widget.MotileWidget attribute)
(motile_plugin.widgets.MotileWidget attribute)
viewer (motile_plugin.layers.track_graph.TrackGraph attribute)
(motile_plugin.layers.track_labels.TrackLabels attribute)
(motile_plugin.layers.track_points.TrackPoints attribute)
(motile_plugin.widgets.motile.motile_widget.MotileWidget attribute)
(motile_plugin.widgets.motile.run_editor.RunEditor attribute)
(motile_plugin.widgets.MotileWidget attribute)
(motile_plugin.widgets.tracks_view.tracks_viewer.TracksViewer attribute)
(motile_plugin.widgets.TracksViewer attribute)