motile_tracker.data_views.views.ortho_views

Attributes

sync_filters

Functions

copy_layer(layer[, name])

get_property_names_from_class(layer_cls)

Return all property names for a Layer class.

point_data_hook(→ None)

Hook to connect to sync points data and visualization between original and copied

paint_event_hook(→ None)

Hook to connect to paint events and process them on the original TracksLabels

colormap_hook(→ None)

Hook to sync colormap changes from the original TrackLabels layer to the copied

track_layers_hook(→ None)

Hook to capture click events on TrackLabels and TrackPoints derived Labels and

initialize_ortho_views(...)

Initialize orthoviews on the current napari Viewer and register hooks and filters.

Module Contents

motile_tracker.data_views.views.ortho_views.copy_layer(layer: napari.layers.Layer, name: str = '')
motile_tracker.data_views.views.ortho_views.get_property_names_from_class(layer_cls)

Return all property names for a Layer class.

motile_tracker.data_views.views.ortho_views.sync_filters
motile_tracker.data_views.views.ortho_views.point_data_hook(orig_layer: motile_tracker.data_views.views.layers.track_points.TrackPoints, copied_layer: motile_tracker.data_views.views.layers.out_of_slice_points.ZOnlyPoints) → None

Hook to connect to sync points data and visualization between original and copied Points layers.

Parameters:

  • orig_layer (TrackPoints) – TracksLabels layer from which the copied layer is derived.

  • copied_layer (ZOnlyPoints) – ZOnlyPoints equivalent of the TracksPoints layer.

motile_tracker.data_views.views.ortho_views.paint_event_hook(orig_layer: motile_tracker.data_views.views.layers.track_labels.TrackLabels, copied_layer: napari.layers.Labels) → None

Hook to connect to paint events and process them on the original TracksLabels layer.

Parameters:

  • orig_layer (TrackLabels) – TracksLabels layer from which the copied layer is derived.

  • copied_layer (Labels) – Labels equivalent of the TracksLabels layer. Instead of processing paint actions on this copy, we want to send them to the original layer and process them there.

motile_tracker.data_views.views.ortho_views.colormap_hook(orig_layer: motile_tracker.data_views.views.layers.track_labels.TrackLabels, copied_layer: napari.layers.Labels) → None

Hook to sync colormap changes from the original TrackLabels layer to the copied layers. We need a hook for the special case in which one of the views is showing a 3D rendering in combination with partially filled contour labels. Since contours are not rendered in 3D, we want to display the non-filled labels with full opacity instead.

Parameters:

  • orig_layer (TrackLabels) – TracksLabels layer from which the copied layer is derived.

  • copied_layer (ContourLabels) – ContourLabels equivalent of the TracksLabels layer.

motile_tracker.data_views.views.ortho_views.track_layers_hook(orig_layer: motile_tracker.data_views.views.layers.track_labels.TrackLabels | motile_tracker.data_views.views.layers.track_points.TrackPoints, copied_layer: napari.layers.Labels | motile_tracker.data_views.views.layers.out_of_slice_points.ZOnlyPoints) → None

Hook to capture click events on TrackLabels and TrackPoints derived Labels and ZOnlyPoints layers, and forward them to their original layer. Also, register key binds for view mode, undo & redo to copied layer, that call functions on the original layer.

Parameters:

  • orig_layer (TrackLabels | TrackPoints) – TracksLabels or TrackPoints layer from which the copied layer is derived.

  • copied_layer (Labels | ZOnlyPoints) – Labels or ZOnlyPoints equivalent of the TracksLabels or TrackPoints layer.

motile_tracker.data_views.views.ortho_views.initialize_ortho_views(viewer: napari.Viewer) → napari_orthogonal_views.ortho_view_manager.OrthoViewManager

Initialize orthoviews on the current napari Viewer and register hooks and filters.

Parameters:

viewer (napari.Viewer) – viewer to set the orthogonal views for.

Returns:

reference to the OrthoViewManager instance

Return type:

OrthoViewManager