motile_tracker.data_views.views.ortho_views

Attributes

sync_filters

Functions

`copy_layer`(layer[, name])
`get_property_names_from_class`(layer_cls)	Return all property names for a Layer class.
`point_data_hook`(→ None)	Hook to connect to sync points data and visualization between original and copied
`paint_event_hook`(→ None)	Hook to connect to paint events and process them on the original TracksLabels
`colormap_hook`(→ None)	Hook to sync colormap changes from the original TrackLabels layer to the copied
`track_layers_hook`(→ None)	Hook to capture click events on TrackLabels and TrackPoints derived Labels and
`initialize_ortho_views`(...)	Initialize orthoviews on the current napari Viewer and register hooks and filters.

Module Contents

motile_tracker.data_views.views.ortho_views.copy_layer(layer: napari.layers.Layer, name: str = '')

motile_tracker.data_views.views.ortho_views.get_property_names_from_class(layer_cls): Return all property names for a Layer class.

motile_tracker.data_views.views.ortho_views.sync_filters

motile_tracker.data_views.views.ortho_views.point_data_hook(orig_layer: motile_tracker.data_views.views.layers.track_points.TrackPoints, copied_layer: motile_tracker.data_views.views.layers.out_of_slice_points.ZOnlyPoints) → None

Hook to connect to sync points data and visualization between original and copied Points layers.

Args:

orig_layer (TrackPoints): TracksLabels layer from which the copied layer is: derived.

copied_layer (ZOnlyPoints): ZOnlyPoints equivalent of the TracksPoints layer.

motile_tracker.data_views.views.ortho_views.paint_event_hook(orig_layer: motile_tracker.data_views.views.layers.track_labels.TrackLabels, copied_layer: napari.layers.Labels) → None

Hook to connect to paint events and process them on the original TracksLabels layer.

Args:

orig_layer (TrackLabels): TracksLabels layer from which the copied layer is: derived.
copied_layer (Labels): Labels equivalent of the TracksLabels layer. Instead of: processing paint actions on this copy, we want to send them to the original layer and process them there.

motile_tracker.data_views.views.ortho_views.colormap_hook(orig_layer: motile_tracker.data_views.views.layers.track_labels.TrackLabels, copied_layer: napari.layers.Labels) → None

Hook to sync colormap changes from the original TrackLabels layer to the copied layers. We need a hook for the special case in which one of the views is showing a 3D

rendering in combination with partially filled contour labels. Since contours are not rendered in 3D, we want to display the non-filled labels with full opacity instead.

Args:

orig_layer (TrackLabels): TracksLabels layer from which the copied layer is: derived.

copied_layer (ContourLabels): ContourLabels equivalent of the TracksLabels layer.

motile_tracker.data_views.views.ortho_views.track_layers_hook(orig_layer: motile_tracker.data_views.views.layers.track_labels.TrackLabels | motile_tracker.data_views.views.layers.track_points.TrackPoints, copied_layer: napari.layers.Labels | motile_tracker.data_views.views.layers.out_of_slice_points.ZOnlyPoints) → None

Hook to capture click events on TrackLabels and TrackPoints derived Labels and ZOnlyPoints layers, and forward them to their original layer. Also, register key binds for view mode, undo & redo to copied layer, that call functions on the original layer.

Args:

orig_layer (TrackLabels | TrackPoints): TracksLabels or TrackPoints layer from: which the copied layer is derived.
copied_layer (Labels | ZOnlyPoints): Labels or ZOnlyPoints equivalent of the TracksLabels: or TrackPoints layer.

motile_tracker.data_views.views.ortho_views.initialize_ortho_views(viewer: napari.Viewer) → napari_orthogonal_views.ortho_view_manager.OrthoViewManager

Initialize orthoviews on the current napari Viewer and register hooks and filters. Args:

viewer (napari.Viewer): viewer to set the orthogonal views for.

Returns:: OrthoViewManager: reference to the OrthoViewManager instance