motile_tracker.import_export.menus.segmentation_widgets

Classes

`ExternalSegmentationWidget`	Widget for specifying the path to an external segmentation image file or folder.
`FileFolderDialog`	Dialog to select a file or folder for segmentation data.
`CSVSegmentationWidget`	QWidget to select segmentation data when importing from CSV
`GeffSegmentationWidget`	QWidget to select segmentation data when importing from geff.

Module Contents

class motile_tracker.import_export.menus.segmentation_widgets.ExternalSegmentationWidget

Bases: qtpy.QtWidgets.QWidget

Widget for specifying the path to an external segmentation image file or folder.

seg_path_updated

image_path_line

image_browse_button

valid = False

seg_label

_browse_segmentation() → None: Open custom dialog to select either a file or a folder

_verify_path() → None: Check that the path exists and is of type .zarr or tiff, change style sheet if invalid

get_segmentation_path() → pathlib.Path | None: Return the path to the segmentation data.

class motile_tracker.import_export.menus.segmentation_widgets.FileFolderDialog(parent=None)

Bases: qtpy.QtWidgets.QDialog

Dialog to select a file or folder for segmentation data.

path_line_edit

file_button

folder_button

ok_button

_select_file(): Open File dialog to select a file and set it to the line edit.

_select_folder(): Open Folder dialog to select a folder and set it to the line edit.

get_selected_path() → pathlib.Path | None: Return the path entered in the line edit.

class motile_tracker.import_export.menus.segmentation_widgets.CSVSegmentationWidget

Bases: qtpy.QtWidgets.QWidget

QWidget to select segmentation data when importing from CSV

seg_updated

button_group

none_radio

external_segmentation_radio

segmentation_widget

_toggle_segmentation(checked: bool) → None: Toggle visibility of the segmentation widget based on the radio button state.

include_seg() → bool: Return True if any segmentation radio button is checked, else False.

get_segmentation_path() → pathlib.Path | None: Return the path to selected segmentation data

load_segmentation() → numpy.ndarray | None: Return the associated segmentation image array if a valid path is given.

class motile_tracker.import_export.menus.segmentation_widgets.GeffSegmentationWidget(root: zarr.Group | None = None)

Bases: qtpy.QtWidgets.QWidget

QWidget to select segmentation data when importing from geff.

seg_updated

root = None

button_group

related_object_radio_buttons

none_radio

related_objects_layout

external_segmentation_radio

segmentation_widget

update_root(root: zarr.Group | None) → None: Update the root group and populate related objects if available. Args:

root (zarr.Group | None): The root group of the geff zarr store.

_toggle_segmentation(checked: bool) → None: Toggle visibility of the segmentation widget based on the radio button state.

include_seg() → bool: Return True if any segmentation radio button is checked, else False.

get_segmentation_path() → pathlib.Path | None: Return the path to selected related object or external segmentation