Index

_

__version__ (in module motile_tracker) _back_to_edit_widget() (menus.run_viewer.RunViewer method) _convert_da_to_np_array() (menus.run_editor.RunEditor method) _emit_run() (menus.run_viewer.RunViewer method) _generate_tracks() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) _has_duplicate_ids() (menus.run_editor.RunEditor static method) _labels_layer_widget() (menus.run_editor.RunEditor method) _load_array() (backend.motile_run.MotileRun static method) (backend.MotileRun static method) _load_list() (backend.motile_run.MotileRun static method) (backend.MotileRun static method) _load_params() (backend.motile_run.MotileRun static method) (backend.MotileRun static method) _make_id() (backend.motile_run.MotileRun method) (backend.MotileRun method) _on_solve_complete() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) _on_solver_event() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method)

_param_label_widget() (menus.params_editor.EditableParam method) (menus.params_editor.OptionalEditableParam method) _params_group() (menus.params_editor.SolverParamsEditor method) (menus.params_viewer.SolverParamsViewer method) _plot_widget() (menus.run_viewer.RunViewer method) _progress_widget() (menus.run_viewer.RunViewer method) _run_widget() (menus.run_editor.RunEditor method) _save_array() (backend.motile_run.MotileRun method) (backend.MotileRun method) _save_attrs() (backend.motile_run.MotileRun method) (backend.MotileRun method) _save_list() (backend.motile_run.MotileRun method) (backend.MotileRun method) _save_params() (backend.motile_run.MotileRun method) (backend.MotileRun method) _set_solver_label() (menus.run_viewer.RunViewer method) _title_widget() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) _unpack_id() (backend.motile_run.MotileRun static method) (backend.MotileRun static method)

A

appear_cost (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute)

B

backend module backend.motile_run module

backend.solve module backend.solver_params module

C

construct_solver() (in module backend.solve)

D

delete() (backend.motile_run.MotileRun method) (backend.MotileRun method) distance_cost (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute)

division_cost (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) dtype (menus.params_editor.EditableParam attribute) (menus.params_viewer.ParamView attribute)

E

edge_selection_cost (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) edit_run (menus.run_viewer.RunViewer attribute) edit_run() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method)

edit_run_widget (menus.motile_widget.MotileWidget attribute) (menus.MotileWidget attribute) EditableParam (class in menus.params_editor) EditableParamValue (class in menus.param_values) emit_run() (menus.run_editor.RunEditor method)

G

gap_plot (menus.run_viewer.RunViewer attribute) gaps (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute) GAPS_FILENAME (in module backend.motile_run)

get_input_layer() (menus.run_editor.RunEditor method) get_run() (menus.run_editor.RunEditor method) get_value() (menus.param_values.EditableParamValue method) (menus.param_values.StaticParamValue method)

I

IN_POINTS_FILENAME (in module backend.motile_run) input_points (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute)

iou_cost (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) iou_row (menus.params_editor.SolverParamsEditor attribute)

L

layer_selection_box (menus.run_editor.RunEditor attribute) load() (backend.motile_run.MotileRun class method) (backend.MotileRun class method)

logger (in module backend.solve) (in module menus.motile_widget) (in module menus.run_editor)

M

main() (in module motile_tracker.__main__) max_children (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) max_edge_distance (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) menus module menus.motile_widget module menus.param_values module menus.params_editor module menus.params_viewer module menus.run_editor module menus.run_viewer module module backend backend.motile_run backend.solve backend.solver_params menus menus.motile_widget menus.param_values menus.params_editor menus.params_viewer menus.run_editor menus.run_viewer motile_tracker motile_tracker.__main__

motile_tracker module motile_tracker.__main__ module MotileRun (class in backend) (class in backend.motile_run) MotileWidget (class in menus) (class in menus.motile_widget)

N

negative (menus.params_editor.EditableParam attribute) new_params (menus.params_editor.SolverParamsEditor attribute) (menus.params_viewer.SolverParamsViewer attribute)

new_run (menus.motile_widget.MotileWidget attribute) (menus.MotileWidget attribute) new_run() (menus.run_editor.RunEditor method)

O

OptionalEditableParam (class in menus.params_editor)

P

param_categories (menus.params_editor.SolverParamsEditor attribute) (menus.params_viewer.SolverParamsViewer attribute) param_label (menus.params_editor.EditableParam attribute) (menus.params_viewer.ParamView attribute) param_name (menus.params_editor.EditableParam attribute) (menus.params_viewer.ParamView attribute)

param_value (menus.params_editor.EditableParam attribute) (menus.params_viewer.ParamView attribute) PARAMS_FILENAME (in module backend.motile_run) params_widget (menus.run_viewer.RunViewer attribute) ParamView (class in menus.params_viewer)

R

reset_progress() (menus.run_viewer.RunViewer method) run (menus.run_viewer.RunViewer attribute) run_name (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute) (menus.run_editor.RunEditor attribute)

RunEditor (class in menus.run_editor) RunViewer (class in menus.run_viewer)

S

save() (backend.motile_run.MotileRun method) (backend.MotileRun method) solve() (in module backend) (in module backend.solve) solve_with_motile() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) solver_event_update() (menus.run_viewer.RunViewer method) solver_label (menus.run_viewer.RunViewer attribute) solver_params (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute) (menus.params_editor.SolverParamsEditor attribute) (menus.params_viewer.SolverParamsViewer attribute)

solver_params_widget (menus.run_editor.RunEditor attribute) solver_update (menus.motile_widget.MotileWidget attribute) (menus.MotileWidget attribute) SolverParams (class in backend) (class in backend.solver_params) SolverParamsEditor (class in menus.params_editor) SolverParamsViewer (class in menus.params_viewer) STAMP_FORMAT (in module backend.motile_run) start_run (menus.run_editor.RunEditor attribute) StaticParamValue (class in menus.param_values) status (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute)

T

time (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute) title (menus.params_editor.EditableParam attribute) (menus.params_viewer.ParamView attribute)

toggle_enable() (menus.params_editor.OptionalEditableParam method) toggle_visible() (menus.params_editor.OptionalEditableParam method)

U

update_from_params() (menus.params_editor.EditableParam method) (menus.params_editor.OptionalEditableParam method) (menus.params_viewer.ParamView method) update_labels_layers() (menus.run_editor.RunEditor method)

update_layer_selection() (menus.run_editor.RunEditor method) update_run() (menus.run_viewer.RunViewer method) update_value() (menus.param_values.EditableParamValue method) (menus.param_values.StaticParamValue method)

V

valueChanged (menus.param_values.EditableParamValue attribute) (menus.param_values.StaticParamValue attribute) view_run() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method)

view_run_widget (menus.motile_widget.MotileWidget attribute) (menus.MotileWidget attribute) viewer (menus.motile_widget.MotileWidget attribute) (menus.MotileWidget attribute) (menus.run_editor.RunEditor attribute)