Index

_

__commit_id__ (in module motile_tracker._version) __contains__() (motile_tracker.data_views.NodeSelectionList method) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList method) __getitem__() (motile_tracker.data_views.NodeSelectionList method) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList method) __iter__() (motile_tracker.data_views.NodeSelectionList method) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList method) __len__() (motile_tracker.data_views.NodeSelectionList method) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList method) __version__ (in module motile_tracker._version) __version_tuple__ (in module motile_tracker._version) _add_group() (motile_tracker.data_views.views_coordinator.groups.CollectionWidget method) _add_lineage() (motile_tracker.data_views.views_coordinator.groups.CollectionWidget method) _add_nodes() (motile_tracker.data_views.views_coordinator.groups.CollectionWidget method) _add_optional_prop() (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget method) _add_selection() (motile_tracker.data_views.views_coordinator.groups.CollectionWidget method) _add_to_combined_solution() (in module backend.solve) _add_track() (motile_tracker.data_views.views_coordinator.groups.CollectionWidget method) _back_to_edit_widget() (menus.run_viewer.RunViewer method) _browse_csv() (motile_tracker.import_export.menus.csv_import_widget.ImportCSVWidget method) _browse_geff() (motile_tracker.import_export.menus.geff_import_widget.ImportGeffWidget method) _browse_segmentation() (motile_tracker.import_export.menus.segmentation_widgets.ExternalSegmentationWidget method) _build_candidate_graph() (in module backend.solve) _cancel() (motile_tracker.import_export.ImportDialog method) (motile_tracker.import_export.menus.import_dialog.ImportDialog method) _center_range() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) _center_view() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) _check_for_duplicates() (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget method) _check_mode() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) _convert_da_to_np_array() (menus.run_editor.RunEditor method) _create_node_attrs() (motile_tracker.data_views.TrackPoints method) (motile_tracker.data_views.views.layers.track_points.TrackPoints method) _create_pyqtgraph_content() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) _drag_modes (motile_tracker.data_views.TrackPoints attribute) (motile_tracker.data_views.views.layers.track_points.TrackPoints attribute) _emit_run() (menus.run_viewer.RunViewer method) _ensure_valid_label() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) _finish() (motile_tracker.import_export.ImportDialog method) (motile_tracker.import_export.menus.import_dialog.ImportDialog method) _flip_axes() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) _generate_axes_metadata() (motile_tracker.import_export.ImportDialog method) (motile_tracker.import_export.menus.import_dialog.ImportDialog method) _generate_tracks() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) _get_base_type() (in module menus.params_editor) _get_colormap() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) _get_initial_mapping() (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget method) _get_tooltip() (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget method) _has_duplicate_ids() (menus.run_editor.RunEditor static method) _invert_selection() (motile_tracker.data_views.views_coordinator.groups.CollectionWidget method) _labels_layer_widget() (menus.run_editor.RunEditor method) _load_array() (backend.motile_run.MotileRun static method) (backend.MotileRun static method) _load_csv() (motile_tracker.import_export.menus.csv_import_widget.ImportCSVWidget method) _load_geff() (motile_tracker.import_export.menus.geff_import_widget.ImportGeffWidget method) _load_list() (backend.motile_run.MotileRun static method) (backend.MotileRun static method) _load_params() (backend.motile_run.MotileRun static method) (backend.MotileRun static method) _load_tracks() (motile_tracker.data_views.views_coordinator.tracks_list.TracksList method) _make_id() (backend.motile_run.MotileRun method) (backend.MotileRun method) _new_label() (in module motile_tracker.data_views.views.layers.track_labels) _on_click() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) _on_line_editing_finished() (motile_tracker.import_export.menus.csv_import_widget.ImportCSVWidget method) (motile_tracker.import_export.menus.geff_import_widget.ImportGeffWidget method) _on_overlap_toggled() (menus.params_editor.SolverParamsEditor method) _on_paint() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) _on_single_window_toggled() (menus.params_editor.SolverParamsEditor method) _on_solve_complete() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) _on_solver_event() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) _param_label_widget() (menus.params_editor.EditableParam method) (menus.params_editor.OptionalEditableParam method) _params_group() (menus.params_editor.SolverParamsEditor method) (menus.params_viewer.SolverParamsViewer method) _parse_paint_event() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) _plot_widget() (menus.run_viewer.RunViewer method) _pos (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) _prev_set (motile_tracker.data_views.NodeSelectionList attribute) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList attribute)

_progress_widget() (menus.run_viewer.RunViewer method) _refresh() (motile_tracker.data_views.TrackGraph method) (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.TrackPoints method) (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views.layers.track_graph.TrackGraph method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) (motile_tracker.data_views.views.layers.track_points.TrackPoints method) (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup method) (motile_tracker.data_views.views_coordinator.groups.CollectionWidget method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) _remove_group() (motile_tracker.data_views.views_coordinator.groups.CollectionWidget method) _remove_nodes() (motile_tracker.data_views.views_coordinator.groups.CollectionWidget method) _remove_optional_prop() (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget method) _remove_selection() (motile_tracker.data_views.views_coordinator.groups.CollectionWidget method) _resize_dialog() (motile_tracker.import_export.ImportDialog method) (motile_tracker.import_export.menus.import_dialog.ImportDialog method) _revert_paint() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) _run_widget() (menus.run_editor.RunEditor method) _save_array() (backend.motile_run.MotileRun method) (backend.MotileRun method) _save_attrs() (backend.motile_run.MotileRun method) (backend.MotileRun method) _save_list() (backend.motile_run.MotileRun method) (backend.MotileRun method) _save_params() (backend.motile_run.MotileRun method) (backend.MotileRun method) _scale_spin_box() (motile_tracker.import_export.menus.scale_widget.ScaleWidget method) _select_file() (motile_tracker.import_export.menus.segmentation_widgets.FileFolderDialog method) _select_folder() (motile_tracker.import_export.menus.segmentation_widgets.FileFolderDialog method) _select_nodes() (motile_tracker.data_views.views_coordinator.groups.CollectionWidget method) _selection_changed() (motile_tracker.data_views.views_coordinator.groups.CollectionWidget method) (motile_tracker.data_views.views_coordinator.tracks_list.TracksList method) _set (motile_tracker.data_views.NodeSelectionList attribute) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList attribute) _set_mode() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_view_mode_widget.TreeViewModeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) _set_pinning_on_graph() (in module backend.solve) _set_plot_type() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_view_feature_widget.TreeViewFeatureWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) _set_solver_label() (menus.run_viewer.RunViewer method) _setup_chunking_constraints() (menus.params_editor.SolverParamsEditor method) _show_export_dialog() (motile_tracker.data_views.views_coordinator.groups.CollectionWidget method) _slice_input_for_single_window() (in module backend.solve) _solve_chunked() (in module backend.solve) _solve_full() (in module backend.solve) _solve_single_window() (in module backend.solve) _solve_window() (in module backend.solve) _title_widget() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) _toggle_chunking_fields() (menus.params_editor.SolverParamsEditor method) _toggle_dims() (motile_tracker.import_export.menus.csv_dimension_widget.DimensionWidget method) _toggle_display_mode() (motile_tracker.data_views.views.tree_view.tree_view_mode_widget.TreeViewModeWidget method) _toggle_plot_type() (motile_tracker.data_views.views.tree_view.tree_view_feature_widget.TreeViewFeatureWidget method) _toggle_segmentation() (motile_tracker.import_export.menus.segmentation_widgets.CSVSegmentationWidget method) (motile_tracker.import_export.menus.segmentation_widgets.GeffSegmentationWidget method) _type_string (motile_tracker.data_views.TrackLabels property) (motile_tracker.data_views.TrackPoints property) (motile_tracker.data_views.views.layers.track_labels.TrackLabels property) (motile_tracker.data_views.views.layers.track_points.TrackPoints property) _unpack_id() (backend.motile_run.MotileRun static method) (backend.MotileRun static method) _update_buttons_and_node_count() (motile_tracker.data_views.views_coordinator.groups.CollectionWidget method) _update_data() (motile_tracker.data_views.TrackPoints method) (motile_tracker.data_views.views.layers.track_points.TrackPoints method) _update_feature() (motile_tracker.data_views.views.tree_view.tree_view_feature_widget.TreeViewFeatureWidget method) _update_field_map_and_scale() (motile_tracker.import_export.ImportDialog method) (motile_tracker.import_export.menus.import_dialog.ImportDialog method) _update_finish_button() (motile_tracker.import_export.ImportDialog method) (motile_tracker.import_export.menus.import_dialog.ImportDialog method) _update_lineage_df() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) _update_max_frames() (menus.run_editor.RunEditor method) _update_overlap_constraints() (menus.params_editor.SolverParamsEditor method) _update_props_left() (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget method) _update_segmentation_widget() (motile_tracker.import_export.ImportDialog method) (motile_tracker.import_export.menus.import_dialog.ImportDialog method) _update_selected() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) _update_selection() (motile_tracker.data_views.TrackPoints method) (motile_tracker.data_views.views.layers.track_points.TrackPoints method) _update_track_data() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) _update_viewed_data() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) _verify_path() (motile_tracker.import_export.menus.segmentation_widgets.ExternalSegmentationWidget method) _wrap_tooltip() (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget method)

A

add() (motile_tracker.data_views.NodeSelectionList method) (motile_tracker.data_views.TrackPoints method) (motile_tracker.data_views.views.layers.track_points.TrackPoints method) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList method) add_lineage_btn (motile_tracker.data_views.views_coordinator.groups.CollectionWidget attribute) add_list() (motile_tracker.data_views.NodeSelectionList method) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList method) add_napari_layers() (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup method) add_nodes_btn (motile_tracker.data_views.views_coordinator.groups.CollectionWidget attribute) add_track_btn (motile_tracker.data_views.views_coordinator.groups.CollectionWidget attribute)

add_tracks() (motile_tracker.data_views.views_coordinator.tracks_list.TracksList method) adj (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) appear_cost (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) AREA (motile_tracker.data_views.graph_attributes.NodeAttr attribute) as_list (motile_tracker.data_views.NodeSelectionList property) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList property) assign_new_label() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) assign_tracklet_ids() (in module test_tree_widget_utils)

B

backend module backend.motile_run module backend.solve module backend.solver_params module

bind_keymap() (in module motile_tracker.data_views.views_coordinator.key_binds) button_group (motile_tracker.import_export.menus.csv_dimension_widget.DimensionWidget attribute) (motile_tracker.import_export.menus.segmentation_widgets.CSVSegmentationWidget attribute) (motile_tracker.import_export.menus.segmentation_widgets.GeffSegmentationWidget attribute) button_layout (motile_tracker.import_export.ImportDialog attribute) (motile_tracker.import_export.menus.import_dialog.ImportDialog attribute)

C

cancel_button (motile_tracker.import_export.ImportDialog attribute) (motile_tracker.import_export.menus.import_dialog.ImportDialog attribute) center_view() (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup method) change_mode (motile_tracker.data_views.views.tree_view.tree_view_mode_widget.TreeViewModeWidget attribute) change_plot_type (motile_tracker.data_views.views.tree_view.tree_view_feature_widget.TreeViewFeatureWidget attribute) clear_layout() (in module motile_tracker.import_export.menus.geff_import_utils) click() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) collection (motile_tracker.data_views.views_coordinator.groups.CollectionButton attribute) collection_list (motile_tracker.data_views.views_coordinator.groups.CollectionWidget attribute) collection_widget (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) CollectionButton (class in motile_tracker.data_views.views_coordinator.groups) CollectionWidget (class in motile_tracker.data_views.views_coordinator.groups) colormap (motile_tracker.data_views.TrackGraph attribute) (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views.layers.track_graph.TrackGraph attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) commit_id (in module motile_tracker._version) confirm_force_operation() (in module motile_tracker.data_views.views_coordinator.user_dialogs) conftest module

construct_solver() (in module backend.solve) content_widget (motile_tracker.import_export.ImportDialog attribute) (motile_tracker.import_export.menus.import_dialog.ImportDialog attribute) convert_4d_arr_to_zarr() (in module motile_tracker.example_data) convert_to_zarr() (in module motile_tracker.example_data) copy_layer() (in module motile_tracker.data_views.views.ortho_views) create_edge() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) create_edge_btn (motile_tracker.application_menus.editing_menu.EditingMenu attribute) (motile_tracker.application_menus.EditingMenu attribute) (motile_tracker.EditingMenu attribute) create_event_val() (in module test_force_operations) (in module test_track_labels) csv_browse_button (motile_tracker.import_export.menus.csv_import_widget.ImportCSVWidget attribute) csv_path_line (motile_tracker.import_export.menus.csv_import_widget.ImportCSVWidget attribute) CSVSegmentationWidget (class in motile_tracker.import_export.menus.segmentation_widgets) custom_select() (in module motile_tracker.data_views.views.layers.track_points) CustomViewBox (class in motile_tracker.data_views.views.tree_view.tree_widget)

D

data_updated (motile_tracker.data_views.TrackPoints attribute) (motile_tracker.data_views.views.layers.track_points.TrackPoints attribute) default_size (motile_tracker.data_views.TrackPoints attribute) (motile_tracker.data_views.views.layers.track_points.TrackPoints attribute) delete (motile_tracker.data_views.views_coordinator.groups.CollectionButton attribute) (motile_tracker.data_views.views_coordinator.tracks_list.TracksButton attribute) delete() (backend.motile_run.MotileRun method) (backend.MotileRun method) delete_edge() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) delete_edge_btn (motile_tracker.application_menus.editing_menu.EditingMenu attribute) (motile_tracker.application_menus.EditingMenu attribute) (motile_tracker.EditingMenu attribute) delete_node() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method)

delete_node_btn (motile_tracker.application_menus.editing_menu.EditingMenu attribute) (motile_tracker.application_menus.EditingMenu attribute) (motile_tracker.EditingMenu attribute) deselect_btn (motile_tracker.data_views.views_coordinator.groups.CollectionWidget attribute) detect_click() (in module motile_tracker.data_views.views.layers.click_utils) df (motile_tracker.import_export.ImportDialog attribute) (motile_tracker.import_export.menus.csv_import_widget.ImportCSVWidget attribute) (motile_tracker.import_export.menus.import_dialog.ImportDialog attribute) DimensionWidget (class in motile_tracker.import_export.menus.csv_dimension_widget) dir_name (motile_tracker.import_export.menus.geff_import_widget.ImportGeffWidget attribute) distance_cost (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) division_cost (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) download_ctc_dataset() (in module motile_tracker.example_data) download_zenodo_dataset() (in module motile_tracker.example_data) dropdown_menu (motile_tracker.data_views.views_coordinator.tracks_list.TracksList attribute) dtype (menus.params_editor.EditableParam attribute)

E

edge_selection_cost (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) EdgeAttr (class in motile_tracker.data_views.graph_attributes) edit_run (menus.run_viewer.RunViewer attribute) edit_run() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) edit_run_widget (menus.motile_widget.MotileWidget attribute) (menus.MotileWidget attribute) EditableParam (class in menus.params_editor) EditableParamValue (class in menus.param_values) EditingMenu (class in motile_tracker) (class in motile_tracker.application_menus) (class in motile_tracker.application_menus.editing_menu)

emit_run() (menus.run_editor.RunEditor method) export (motile_tracker.data_views.views_coordinator.groups.CollectionButton attribute) (motile_tracker.data_views.views_coordinator.tracks_list.TracksButton attribute) ExportDialog (class in motile_tracker.import_export.menus.export_dialog) external_segmentation_radio (motile_tracker.import_export.menus.segmentation_widgets.CSVSegmentationWidget attribute) (motile_tracker.import_export.menus.segmentation_widgets.GeffSegmentationWidget attribute) ExternalSegmentationWidget (class in motile_tracker.import_export.menus.segmentation_widgets) extract_csv_property_fields() (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget method) extract_geff_property_fields() (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget method) extract_lineage_tree() (in module motile_tracker.data_views.views.tree_view.tree_widget_utils) extract_sorted_tracks() (in module motile_tracker.data_views.views.tree_view.tree_widget_utils)

F

feature (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) feature_dropdown (motile_tracker.data_views.views.tree_view.tree_view_feature_widget.TreeViewFeatureWidget attribute) file_button (motile_tracker.import_export.menus.segmentation_widgets.FileFolderDialog attribute) file_dialog (motile_tracker.data_views.views_coordinator.tracks_list.TracksList attribute) FileFolderDialog (class in motile_tracker.import_export.menus.segmentation_widgets) filter_visible_nodes() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) find_geff_group() (in module motile_tracker.import_export.menus.geff_import_utils) find_root() (in module motile_tracker.data_views.views.tree_view.tree_widget_utils) finish_button (motile_tracker.import_export.ImportDialog attribute) (motile_tracker.import_export.menus.import_dialog.ImportDialog attribute)

flip() (motile_tracker.data_views.views.tree_view.flip_axes_widget.FlipTreeWidget method) flip_tree (motile_tracker.data_views.views.tree_view.flip_axes_widget.FlipTreeWidget attribute) flip_widget (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) FlipTreeWidget (class in motile_tracker.data_views.views.tree_view.flip_axes_widget) Fluo_N2DL_HeLa() (in module motile_tracker.example_data) Fluo_N2DL_HeLa_crop() (in module motile_tracker.example_data) folder_button (motile_tracker.import_export.menus.segmentation_widgets.FileFolderDialog attribute) force (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute)

G

g (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) gap_plot (menus.run_viewer.RunViewer attribute) gaps (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute) GAPS_FILENAME (in module backend.motile_run) geff_browse_button (motile_tracker.import_export.menus.geff_import_widget.ImportGeffWidget attribute) geff_path_line (motile_tracker.import_export.menus.geff_import_widget.ImportGeffWidget attribute) GeffSegmentationWidget (class in motile_tracker.import_export.menus.segmentation_widgets) get_attr_dtype_pandas() (in module motile_tracker.import_export.menus.prop_map_widget) get_attr_dtype_zarr() (in module motile_tracker.import_export.menus.prop_map_widget) get_click_value() (in module motile_tracker.data_views.views.layers.click_utils) get_current_feature() (motile_tracker.data_views.views.tree_view.tree_view_feature_widget.TreeViewFeatureWidget method) get_features() (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget method) get_features_from_tracks() (in module motile_tracker.data_views.views.tree_view.tree_widget_utils) get_input_layer() (menus.run_editor.RunEditor method) get_instance() (motile_tracker.data_views.TracksViewer class method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer class method) get_name_map() (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget method) get_next_track_node() (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget method) get_node_features() (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget method)

get_predecessor() (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget method) get_property_names_from_class() (in module motile_tracker.data_views.views.ortho_views) get_run() (menus.run_editor.RunEditor method) get_scale() (motile_tracker.import_export.menus.scale_widget.ScaleWidget method) get_segmentation_path() (motile_tracker.import_export.menus.segmentation_widgets.CSVSegmentationWidget method) (motile_tracker.import_export.menus.segmentation_widgets.ExternalSegmentationWidget method) (motile_tracker.import_export.menus.segmentation_widgets.GeffSegmentationWidget method) get_selected_path() (motile_tracker.import_export.menus.segmentation_widgets.FileFolderDialog method) get_sorted_track_ids() (in module motile_tracker.data_views.views.tree_view.tree_widget_utils) get_successor() (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget method) get_symbols() (motile_tracker.data_views.TrackPoints method) (motile_tracker.data_views.views.layers.track_points.TrackPoints method) get_value() (menus.param_values.EditableParamValue method) (menus.param_values.StaticParamValue method) graph (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) graph_2d() (in module test_tree_widget_utils) graph_3d() (in module conftest) group_changed (motile_tracker.data_views.views_coordinator.groups.CollectionWidget attribute) group_name (motile_tracker.data_views.views_coordinator.groups.CollectionWidget attribute)

H

has_duplicates (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget attribute)

I

image_browse_button (motile_tracker.import_export.menus.segmentation_widgets.ExternalSegmentationWidget attribute) image_path_line (motile_tracker.import_export.menus.segmentation_widgets.ExternalSegmentationWidget attribute) import_type (motile_tracker.import_export.ImportDialog attribute) (motile_tracker.import_export.menus.import_dialog.ImportDialog attribute) ImportCSVWidget (class in motile_tracker.import_export.menus.csv_import_widget) ImportDialog (class in motile_tracker.import_export) (class in motile_tracker.import_export.menus.import_dialog) ImportGeffWidget (class in motile_tracker.import_export.menus.geff_import_widget) IN_POINTS_FILENAME (in module backend.motile_run) incl_z (motile_tracker.import_export.ImportDialog attribute) (motile_tracker.import_export.menus.csv_dimension_widget.DimensionWidget attribute) (motile_tracker.import_export.menus.import_dialog.ImportDialog attribute) (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget attribute)

include_seg() (motile_tracker.import_export.menus.segmentation_widgets.CSVSegmentationWidget method) (motile_tracker.import_export.menus.segmentation_widgets.GeffSegmentationWidget method) infer_dims_from_segmentation() (motile_tracker.import_export.ImportDialog method) (motile_tracker.import_export.menus.import_dialog.ImportDialog method) initialize_ortho_views() (in module motile_tracker.data_views.views.ortho_views) input_points (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute) invert_btn (motile_tracker.data_views.views_coordinator.groups.CollectionWidget attribute) IOU (motile_tracker.data_views.graph_attributes.EdgeAttr attribute) iou_cost (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) iou_row (menus.params_editor.SolverParamsEditor attribute)

K

KEYMAP (in module motile_tracker.data_views.views_coordinator.key_binds) keyPressEvent() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method)

keyReleaseEvent() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method)

L

label (motile_tracker.application_menus.editing_menu.EditingMenu attribute) (motile_tracker.application_menus.EditingMenu attribute) (motile_tracker.EditingMenu attribute) layer_selection_box (menus.run_editor.RunEditor attribute) lineage_df (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) link_experimental_clipping_planes() (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup method) list_updated (motile_tracker.data_views.NodeSelectionList attribute) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList attribute)

load() (backend.motile_run.MotileRun class method) (backend.MotileRun class method) load_motile_run() (motile_tracker.data_views.views_coordinator.tracks_list.TracksList method) load_segmentation() (motile_tracker.import_export.menus.segmentation_widgets.CSVSegmentationWidget method) load_tracks() (motile_tracker.data_views.views_coordinator.tracks_list.TracksList method) logger (in module backend.solve) (in module menus.motile_widget) (in module menus.run_editor) (in module motile_tracker.example_data)

M

main() (in module motile_tracker.__main__) MainApp (class in motile_tracker) (class in motile_tracker.application_menus) (class in motile_tracker.application_menus.main_app) mapping_labels (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget attribute) mapping_layout (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget attribute) mapping_widgets (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget attribute) max_children (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) max_edge_distance (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) menu_widget (motile_tracker.application_menus.main_app.MainApp attribute) (motile_tracker.application_menus.MainApp attribute) (motile_tracker.MainApp attribute) menus module menus.motile_widget module menus.param_values module menus.params_editor module menus.params_viewer module menus.run_editor module menus.run_viewer module MenuWidget (class in motile_tracker) (class in motile_tracker.application_menus) (class in motile_tracker.application_menus.menu_widget) metadata (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget attribute) MockEvent (class in test_force_operations) (class in test_ortho_views) (class in test_track_labels) mode (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.tree_view_mode_widget.TreeViewModeWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) mode_widget (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) model_config (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) module backend backend.motile_run backend.solve backend.solver_params conftest menus menus.motile_widget menus.param_values menus.params_editor menus.params_viewer menus.run_editor menus.run_viewer motile_tracker motile_tracker.__main__ motile_tracker._version motile_tracker.application_menus motile_tracker.application_menus.editing_menu motile_tracker.application_menus.main_app motile_tracker.application_menus.menu_widget motile_tracker.data_views motile_tracker.data_views.graph_attributes motile_tracker.data_views.views motile_tracker.data_views.views.layers motile_tracker.data_views.views.layers.click_utils motile_tracker.data_views.views.layers.track_graph motile_tracker.data_views.views.layers.track_labels motile_tracker.data_views.views.layers.track_points motile_tracker.data_views.views.layers.tracks_layer_group motile_tracker.data_views.views.ortho_views motile_tracker.data_views.views.tree_view motile_tracker.data_views.views.tree_view.flip_axes_widget motile_tracker.data_views.views.tree_view.navigation_widget motile_tracker.data_views.views.tree_view.tree_view_feature_widget motile_tracker.data_views.views.tree_view.tree_view_mode_widget motile_tracker.data_views.views.tree_view.tree_widget motile_tracker.data_views.views.tree_view.tree_widget_utils motile_tracker.data_views.views_coordinator motile_tracker.data_views.views_coordinator.groups motile_tracker.data_views.views_coordinator.key_binds motile_tracker.data_views.views_coordinator.node_selection_list motile_tracker.data_views.views_coordinator.tracks_list motile_tracker.data_views.views_coordinator.tracks_viewer motile_tracker.data_views.views_coordinator.user_dialogs motile_tracker.example_data motile_tracker.import_export motile_tracker.import_export.menus motile_tracker.import_export.menus.csv_dimension_widget motile_tracker.import_export.menus.csv_import_widget motile_tracker.import_export.menus.export_dialog motile_tracker.import_export.menus.geff_import_utils motile_tracker.import_export.menus.geff_import_widget motile_tracker.import_export.menus.import_dialog motile_tracker.import_export.menus.prop_map_widget motile_tracker.import_export.menus.scale_widget motile_tracker.import_export.menus.segmentation_widgets motile_tracker.launcher test_force_operations test_link_clipping_planes test_ortho_views test_track_labels test_tree_widget_utils

motile_tracker module motile_tracker.__main__ module motile_tracker._version module motile_tracker.application_menus module motile_tracker.application_menus.editing_menu module motile_tracker.application_menus.main_app module motile_tracker.application_menus.menu_widget module motile_tracker.data_views module motile_tracker.data_views.graph_attributes module motile_tracker.data_views.views module motile_tracker.data_views.views.layers module motile_tracker.data_views.views.layers.click_utils module motile_tracker.data_views.views.layers.track_graph module motile_tracker.data_views.views.layers.track_labels module motile_tracker.data_views.views.layers.track_points module motile_tracker.data_views.views.layers.tracks_layer_group module motile_tracker.data_views.views.ortho_views module motile_tracker.data_views.views.tree_view module motile_tracker.data_views.views.tree_view.flip_axes_widget module motile_tracker.data_views.views.tree_view.navigation_widget module motile_tracker.data_views.views.tree_view.tree_view_feature_widget module motile_tracker.data_views.views.tree_view.tree_view_mode_widget module motile_tracker.data_views.views.tree_view.tree_widget module motile_tracker.data_views.views.tree_view.tree_widget_utils module motile_tracker.data_views.views_coordinator module motile_tracker.data_views.views_coordinator.groups module motile_tracker.data_views.views_coordinator.key_binds module motile_tracker.data_views.views_coordinator.node_selection_list module motile_tracker.data_views.views_coordinator.tracks_list module motile_tracker.data_views.views_coordinator.tracks_viewer module motile_tracker.data_views.views_coordinator.user_dialogs module motile_tracker.example_data module motile_tracker.import_export module motile_tracker.import_export.menus module motile_tracker.import_export.menus.csv_dimension_widget module motile_tracker.import_export.menus.csv_import_widget module motile_tracker.import_export.menus.export_dialog module motile_tracker.import_export.menus.geff_import_utils module motile_tracker.import_export.menus.geff_import_widget module motile_tracker.import_export.menus.import_dialog module motile_tracker.import_export.menus.prop_map_widget module motile_tracker.import_export.menus.scale_widget module motile_tracker.import_export.menus.segmentation_widgets module motile_tracker.launcher module MotileRun (class in backend) (class in backend.motile_run) MotileWidget (class in menus) (class in menus.motile_widget) Mouse_Embryo_Membrane() (in module motile_tracker.example_data) mouseClickEvent() (motile_tracker.data_views.views.tree_view.tree_widget.CustomViewBox method) mouseDragEvent() (motile_tracker.data_views.views.tree_view.tree_widget.CustomViewBox method) move() (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget method)

N

name (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup attribute) (motile_tracker.data_views.views_coordinator.groups.CollectionButton attribute) (motile_tracker.data_views.views_coordinator.tracks_list.TracksButton attribute) (motile_tracker.import_export.ImportDialog attribute) (motile_tracker.import_export.menus.import_dialog.ImportDialog attribute) navigation_widget (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) NavigationWidget (class in motile_tracker.data_views.views.tree_view.navigation_widget) negative (menus.params_editor.EditableParam attribute) new_colormap() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) new_group_button (motile_tracker.data_views.views_coordinator.groups.CollectionWidget attribute) new_label() (in module motile_tracker.data_views.views.layers.track_labels) new_params (menus.params_editor.SolverParamsEditor attribute) (menus.params_viewer.SolverParamsViewer attribute) new_run (menus.motile_widget.MotileWidget attribute) (menus.MotileWidget attribute)

new_run() (menus.run_editor.RunEditor method) node_attrs (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget attribute) node_clicked (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) node_count (motile_tracker.data_views.views_coordinator.groups.CollectionButton attribute) node_ids (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) node_index_dict (motile_tracker.data_views.TrackPoints attribute) (motile_tracker.data_views.views.layers.track_points.TrackPoints attribute) NodeAttr (class in motile_tracker.data_views.graph_attributes) nodes (motile_tracker.data_views.TrackPoints attribute) (motile_tracker.data_views.views.layers.track_points.TrackPoints attribute) nodes_selected (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) NodeSelectionList (class in motile_tracker.data_views) (class in motile_tracker.data_views.views_coordinator.node_selection_list) none_radio (motile_tracker.import_export.menus.segmentation_widgets.CSVSegmentationWidget attribute) (motile_tracker.import_export.menus.segmentation_widgets.GeffSegmentationWidget attribute)

O

ok_button (motile_tracker.import_export.menus.segmentation_widgets.FileFolderDialog attribute) optional_features (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget attribute) optional_mapping_layout (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget attribute) OptionalEditableParam (class in menus.params_editor) order_roots_by_prev() (in module motile_tracker.data_views.views.tree_view.tree_widget_utils)

outline_pen (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) overlap_size (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) overlap_size_must_be_positive() (backend.solver_params.SolverParams class method) (backend.SolverParams class method) overlap_size_row (menus.params_editor.SolverParamsEditor attribute)

P

paint_event_hook() (in module motile_tracker.data_views.views.ortho_views) param_categories (menus.params_editor.SolverParamsEditor attribute) (menus.params_viewer.SolverParamsViewer attribute) param_label (menus.params_editor.EditableParam attribute) (menus.params_viewer.ParamView attribute) param_name (menus.params_editor.EditableParam attribute) (menus.params_viewer.ParamView attribute) param_value (menus.params_editor.EditableParam attribute) (menus.params_viewer.ParamView attribute) PARAMS_FILENAME (in module backend.motile_run) params_widget (menus.run_viewer.RunViewer attribute) ParamView (class in menus.params_viewer) path_line_edit (motile_tracker.import_export.menus.segmentation_widgets.FileFolderDialog attribute) pen (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) PIN_ATTR (in module backend.solve)

plot_type (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget attribute) (motile_tracker.data_views.views.tree_view.tree_view_feature_widget.TreeViewFeatureWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) plot_type_widget (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) point_data_hook() (in module motile_tracker.data_views.views.ortho_views) points_layer (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup attribute) POS (motile_tracker.data_views.graph_attributes.NodeAttr attribute) process_click() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.TrackPoints method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) (motile_tracker.data_views.views.layers.track_points.TrackPoints method) prop_map_widget (motile_tracker.import_export.ImportDialog attribute) (motile_tracker.import_export.menus.import_dialog.ImportDialog attribute) props_updated (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget attribute)

R

radio_2D (motile_tracker.import_export.menus.csv_dimension_widget.DimensionWidget attribute) radio_3D (motile_tracker.import_export.menus.csv_dimension_widget.DimensionWidget attribute) read_ctc_dataset() (in module motile_tracker.example_data) read_zenodo_dataset() (in module motile_tracker.example_data) redo() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) redo_btn (motile_tracker.application_menus.editing_menu.EditingMenu attribute) (motile_tracker.application_menus.EditingMenu attribute) (motile_tracker.EditingMenu attribute) related_object_radio_buttons (motile_tracker.import_export.menus.segmentation_widgets.GeffSegmentationWidget attribute) related_objects_layout (motile_tracker.import_export.menus.segmentation_widgets.GeffSegmentationWidget attribute) remove_lineage_btn (motile_tracker.data_views.views_coordinator.groups.CollectionWidget attribute) remove_napari_layer() (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup method) remove_napari_layers() (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup method) remove_node_btn (motile_tracker.data_views.views_coordinator.groups.CollectionWidget attribute)

remove_track_btn (motile_tracker.data_views.views_coordinator.groups.CollectionWidget attribute) remove_tracks() (motile_tracker.data_views.views_coordinator.tracks_list.TracksList method) request_new_track() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) reselect_btn (motile_tracker.data_views.views_coordinator.groups.CollectionWidget attribute) reset() (motile_tracker.data_views.NodeSelectionList method) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList method) reset_progress() (menus.run_viewer.RunViewer method) reset_tracks_viewer() (in module conftest) restore() (motile_tracker.data_views.NodeSelectionList method) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList method) retrieve_existing_groups() (motile_tracker.data_views.views_coordinator.groups.CollectionWidget method) root (motile_tracker.import_export.menus.geff_import_widget.ImportGeffWidget attribute) (motile_tracker.import_export.menus.segmentation_widgets.GeffSegmentationWidget attribute) run (menus.run_viewer.RunViewer attribute) run_name (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute) (menus.run_editor.RunEditor attribute) RunEditor (class in menus.run_editor) RunViewer (class in menus.run_viewer)

S

save (motile_tracker.data_views.views_coordinator.tracks_list.TracksButton attribute) save() (backend.motile_run.MotileRun method) (backend.MotileRun method) save_dialog (motile_tracker.data_views.views_coordinator.tracks_list.TracksList attribute) save_tracks() (motile_tracker.data_views.views_coordinator.tracks_list.TracksList method) scale (motile_tracker.import_export.menus.scale_widget.ScaleWidget attribute) scale_layout (motile_tracker.import_export.menus.scale_widget.ScaleWidget attribute) scale_widget (motile_tracker.import_export.ImportDialog attribute) (motile_tracker.import_export.menus.import_dialog.ImportDialog attribute) ScaleWidget (class in motile_tracker.import_export.menus.scale_widget) scroll_area (motile_tracker.import_export.ImportDialog attribute) (motile_tracker.import_export.menus.import_dialog.ImportDialog attribute) seg (motile_tracker.import_export.ImportDialog attribute) (motile_tracker.import_export.menus.import_dialog.ImportDialog attribute) (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget attribute) SEG_HYPO (motile_tracker.data_views.graph_attributes.NodeAttr attribute) SEG_ID (motile_tracker.data_views.graph_attributes.NodeAttr attribute) seg_label (motile_tracker.import_export.menus.segmentation_widgets.ExternalSegmentationWidget attribute) seg_layer (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup attribute) seg_path_updated (motile_tracker.import_export.menus.segmentation_widgets.ExternalSegmentationWidget attribute) seg_updated (motile_tracker.import_export.menus.segmentation_widgets.CSVSegmentationWidget attribute) (motile_tracker.import_export.menus.segmentation_widgets.GeffSegmentationWidget attribute) segmentation_3d() (in module conftest) segmentation_widget (motile_tracker.import_export.menus.segmentation_widgets.CSVSegmentationWidget attribute) (motile_tracker.import_export.menus.segmentation_widgets.GeffSegmentationWidget attribute) select_btn (motile_tracker.data_views.views_coordinator.groups.CollectionWidget attribute) select_points_in_rect() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) selected_collection (motile_tracker.data_views.views_coordinator.groups.CollectionWidget attribute) selected_nodes (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) selected_rect (motile_tracker.data_views.views.tree_view.tree_widget.CustomViewBox attribute) selected_track (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) set_data() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) set_display_mode() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) set_keybinds() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) set_max_frames() (menus.params_editor.SolverParamsEditor method) set_mouse_enabled() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) set_napari_view() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) set_new_track_id() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method)

set_point_size() (motile_tracker.data_views.TrackPoints method) (motile_tracker.data_views.views.layers.track_points.TrackPoints method) set_selection() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) set_track_id_color() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) set_tracks() (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup method) set_view() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) show_all_radio (motile_tracker.data_views.views.tree_view.tree_view_mode_widget.TreeViewModeWidget attribute) show_area_radio (motile_tracker.data_views.views.tree_view.tree_view_feature_widget.TreeViewFeatureWidget attribute) show_export_dialog() (motile_tracker.data_views.views_coordinator.tracks_list.TracksList method) (motile_tracker.import_export.menus.export_dialog.ExportDialog static method) show_lineage_radio (motile_tracker.data_views.views.tree_view.tree_view_mode_widget.TreeViewModeWidget attribute) show_tree_radio (motile_tracker.data_views.views.tree_view.tree_view_feature_widget.TreeViewFeatureWidget attribute) showAxRect() (motile_tracker.data_views.views.tree_view.tree_widget.CustomViewBox method) single_window_start (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) single_window_start_row (menus.params_editor.SolverParamsEditor attribute) sizeHint() (motile_tracker.data_views.views_coordinator.groups.CollectionButton method) (motile_tracker.data_views.views_coordinator.tracks_list.TracksButton method) sizes (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) solve() (in module backend) (in module backend.solve) solve_with_motile() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) solver_event_update() (menus.run_viewer.RunViewer method) solver_label (menus.run_viewer.RunViewer attribute) solver_params (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute) (menus.params_editor.SolverParamsEditor attribute) (menus.params_viewer.SolverParamsViewer attribute) solver_params_widget (menus.run_editor.RunEditor attribute) solver_update (menus.motile_widget.MotileWidget attribute) (menus.MotileWidget attribute) SolverParams (class in backend) (class in backend.solver_params) SolverParamsEditor (class in menus.params_editor) SolverParamsViewer (class in menus.params_viewer) STAMP_FORMAT (in module backend.motile_run) StandardFieldMapWidget (class in motile_tracker.import_export.menus.prop_map_widget) start_run (menus.run_editor.RunEditor attribute) StaticParamValue (class in menus.param_values) status (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute) store_path (motile_tracker.import_export.menus.geff_import_widget.ImportGeffWidget attribute) symbolBrush (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) symbolmap (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) symbols (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) sync_filters (in module motile_tracker.data_views.views.ortho_views)

T

tabwidget (motile_tracker.application_menus.menu_widget.MenuWidget attribute) (motile_tracker.application_menus.MenuWidget attribute) (motile_tracker.MenuWidget attribute) test_confirm_force_operation_all_buttons() (in module test_force_operations) test_ensure_valid_label() (in module test_track_labels) test_force_operations module test_invalid_edge_force() (in module test_force_operations) test_link_clipping_planes module test_link_experimental_clipping_planes() (in module test_link_clipping_planes) test_on_paint_invalid_action_upstream_division1_forceable() (in module test_force_operations) test_on_paint_invalid_action_upstream_division2_forceable() (in module test_force_operations) test_ortho_views module test_ortho_views() (in module test_ortho_views) test_paint_event() (in module test_track_labels) test_track_df() (in module test_tree_widget_utils) test_track_labels module test_tree_widget_utils module time (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute) TIME (motile_tracker.data_views.graph_attributes.NodeAttr attribute) title (menus.params_editor.EditableParam attribute) (menus.params_viewer.ParamView attribute) toggle_display_mode() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) toggle_enable() (menus.params_editor.OptionalEditableParam method) toggle_feature_mode() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) toggle_visible() (menus.params_editor.OptionalEditableParam method) track_df (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) TRACK_ID (motile_tracker.data_views.graph_attributes.NodeAttr attribute) track_id_color (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) track_layers_hook() (in module motile_tracker.data_views.views.ortho_views) TrackGraph (class in motile_tracker.data_views) (class in motile_tracker.data_views.views.layers.track_graph)

tracking_layers (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) TrackLabels (class in motile_tracker.data_views) (class in motile_tracker.data_views.views.layers.track_labels) TrackListWidget (class in motile_tracker.data_views.views_coordinator.tracks_list) TrackPoints (class in motile_tracker.data_views) (class in motile_tracker.data_views.views.layers.track_points) tracks (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup attribute) (motile_tracker.data_views.views_coordinator.tracks_list.TracksButton attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) tracks_layer (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup attribute) tracks_layer_graph (motile_tracker.data_views.TrackGraph attribute) (motile_tracker.data_views.views.layers.track_graph.TrackGraph attribute) tracks_list (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views_coordinator.tracks_list.TracksList attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) tracks_updated (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) tracks_viewer (motile_tracker.application_menus.editing_menu.EditingMenu attribute) (motile_tracker.application_menus.EditingMenu attribute) (motile_tracker.data_views.TrackGraph attribute) (motile_tracker.data_views.TrackLabels attribute) (motile_tracker.data_views.TrackPoints attribute) (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.layers.track_graph.TrackGraph attribute) (motile_tracker.data_views.views.layers.track_labels.TrackLabels attribute) (motile_tracker.data_views.views.layers.track_points.TrackPoints attribute) (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) (motile_tracker.data_views.views_coordinator.groups.CollectionWidget attribute) (motile_tracker.EditingMenu attribute) TracksButton (class in motile_tracker.data_views.views_coordinator.tracks_list) TracksLayerGroup (class in motile_tracker.data_views.views.layers.tracks_layer_group) TracksList (class in motile_tracker.data_views.views_coordinator.tracks_list) TracksViewer (class in motile_tracker.data_views) (class in motile_tracker.data_views.views_coordinator.tracks_viewer) tree_widget (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) TreePlot (class in motile_tracker.data_views.views.tree_view.tree_widget) TreeViewFeatureWidget (class in motile_tracker.data_views.views.tree_view.tree_view_feature_widget) TreeViewModeWidget (class in motile_tracker.data_views.views.tree_view.tree_view_mode_widget) TreeWidget (class in motile_tracker.data_views) (class in motile_tracker.data_views.views.tree_view.tree_widget)

U

ui_default (menus.params_editor.OptionalEditableParam attribute) undo() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) undo_btn (motile_tracker.application_menus.editing_menu.EditingMenu attribute) (motile_tracker.application_menus.EditingMenu attribute) (motile_tracker.EditingMenu attribute) unlink_experimental_clipping_planes() (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup method) update() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) (motile_tracker.import_export.menus.scale_widget.ScaleWidget method) update_buttons (motile_tracker.import_export.menus.csv_import_widget.ImportCSVWidget attribute) (motile_tracker.import_export.menus.geff_import_widget.ImportGeffWidget attribute) update_buttons() (motile_tracker.application_menus.editing_menu.EditingMenu method) (motile_tracker.application_menus.EditingMenu method) (motile_tracker.EditingMenu method) update_dims (motile_tracker.import_export.menus.csv_dimension_widget.DimensionWidget attribute) update_feature_dropdown() (motile_tracker.data_views.views.tree_view.tree_view_feature_widget.TreeViewFeatureWidget method) update_from_params() (menus.params_editor.EditableParam method) (menus.params_editor.OptionalEditableParam method) (menus.params_viewer.ParamView method) update_label_colormap() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method)

update_labels_layers() (menus.run_editor.RunEditor method) update_layer_selection() (menus.run_editor.RunEditor method) update_mapping() (motile_tracker.import_export.menus.prop_map_widget.StandardFieldMapWidget method) update_napari_tracks() (in module motile_tracker.data_views.views.layers.track_graph) update_node_count() (motile_tracker.data_views.views_coordinator.groups.CollectionButton method) update_point_outline() (motile_tracker.data_views.TrackPoints method) (motile_tracker.data_views.views.layers.track_points.TrackPoints method) update_root() (motile_tracker.import_export.menus.segmentation_widgets.GeffSegmentationWidget method) update_run() (menus.run_viewer.RunViewer method) update_selected_label() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) update_selection() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) update_track_id (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) update_track_id_color() (motile_tracker.application_menus.editing_menu.EditingMenu method) (motile_tracker.application_menus.EditingMenu method) (motile_tracker.EditingMenu method) update_track_visibility() (motile_tracker.data_views.TrackGraph method) (motile_tracker.data_views.views.layers.track_graph.TrackGraph method) update_tracks() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) update_value() (menus.param_values.EditableParamValue method) (menus.param_values.StaticParamValue method) update_visible() (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup method)

V

valid (motile_tracker.import_export.menus.segmentation_widgets.ExternalSegmentationWidget attribute) value (test_force_operations.MockEvent attribute) (test_ortho_views.MockEvent attribute) (test_track_labels.MockEvent attribute) valueChanged (menus.param_values.EditableParamValue attribute) (menus.param_values.StaticParamValue attribute) version (in module motile_tracker._version) version_tuple (in module motile_tracker._version) view_direction (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) view_run() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method)

view_run_widget (menus.motile_widget.MotileWidget attribute) (menus.MotileWidget attribute) view_tracks (motile_tracker.data_views.views_coordinator.tracks_list.TracksList attribute) viewer (in module motile_tracker.launcher) (menus.motile_widget.MotileWidget attribute) (menus.MotileWidget attribute) (menus.run_editor.RunEditor attribute) (motile_tracker.data_views.TrackLabels attribute) (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views.layers.track_labels.TrackLabels attribute) (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) visible (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute)

W

window_size (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute)

window_size_must_be_at_least_two() (backend.solver_params.SolverParams class method) (backend.SolverParams class method) window_size_row (menus.params_editor.SolverParamsEditor attribute)