Index

_

__getitem__() (motile_tracker.data_views.NodeSelectionList method) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList method) __len__() (motile_tracker.data_views.NodeSelectionList method) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList method) __version__ (in module motile_tracker) _add_edges() (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method) _add_nodes() (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method) _apply() (motile_tracker.data_model.actions.AddEdges method) (motile_tracker.data_model.actions.AddNodes method) (motile_tracker.data_model.actions.DeleteEdges method) (motile_tracker.data_model.actions.DeleteNodes method) (motile_tracker.data_model.actions.UpdateNodeAttrs method) (motile_tracker.data_model.actions.UpdateNodeSegs method) (motile_tracker.data_model.actions.UpdateTrackID method) _assign_tracklet_ids() (motile_tracker.data_model.solution_tracks.SolutionTracks method) (motile_tracker.data_model.SolutionTracks method) _back_to_edit_widget() (menus.run_viewer.RunViewer method) _browse_csv() (motile_tracker.import_export.menus.csv_widget.CSVWidget method) _browse_segmentation() (motile_tracker.import_export.menus.segmentation_widget.SegmentationWidget method) _center_range() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) _center_view() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) _check_mode() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) _compute_edge_attrs() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) _compute_ndim() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) _compute_node_attrs() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) _confirm_remove_division_edges() (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method) _convert_da_to_np_array() (menus.run_editor.RunEditor method) _create_node_attrs() (motile_tracker.data_views.TrackPoints method) (motile_tracker.data_views.views.layers.track_points.TrackPoints method) _create_pyqtgraph_content() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) _delete_edges() (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method) _delete_nodes() (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method) _emit_run() (menus.run_viewer.RunViewer method) _ensure_valid_label() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) _finish() (motile_tracker.import_export.ImportTracksDialog method) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog method) _flip_axes() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) _generate_tracks() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) _get_colormap() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) _get_edge_attr() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) _get_edges_attr() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) _get_initial_mapping() (motile_tracker.import_export.menus.csv_widget.CSVFieldMapWidget method) _get_new_node_ids() (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method) _get_node_attr() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) _get_nodes_attr() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) _get_pred_and_succ() (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method) _get_tooltip() (motile_tracker.import_export.menus.csv_widget.CSVFieldMapWidget method) _go_to_next_page() (motile_tracker.import_export.ImportTracksDialog method) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog method) _go_to_previous_page() (motile_tracker.import_export.ImportTracksDialog method) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog method) _has_duplicate_ids() (menus.run_editor.RunEditor static method) _initialize_track_ids() (motile_tracker.data_model.solution_tracks.SolutionTracks method) (motile_tracker.data_model.SolutionTracks method) _labels_layer_widget() (menus.run_editor.RunEditor method) _list (motile_tracker.data_views.NodeSelectionList attribute) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList attribute) _load_array() (backend.motile_run.MotileRun static method) (backend.MotileRun static method) _load_attrs() (motile_tracker.data_model.Tracks static method) (motile_tracker.data_model.tracks.Tracks static method) _load_csv() (motile_tracker.import_export.menus.csv_widget.CSVWidget method) _load_external_tracks() (motile_tracker.data_views.views_coordinator.tracks_list.TracksList method) _load_graph() (motile_tracker.data_model.Tracks static method) (motile_tracker.data_model.tracks.Tracks static method) _load_list() (backend.motile_run.MotileRun static method) (backend.MotileRun static method) _load_params() (backend.motile_run.MotileRun static method) (backend.MotileRun static method) _load_seg() (motile_tracker.data_model.Tracks static method) (motile_tracker.data_model.tracks.Tracks static method) _load_segmentation() (motile_tracker.import_export.menus.segmentation_widget.SegmentationWidget method) _make_id() (backend.motile_run.MotileRun method) (backend.MotileRun method) _new_label() (in module motile_tracker.data_views.views.layers.track_labels) _on_click() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method)

_on_csv_editing_finished() (motile_tracker.import_export.menus.csv_widget.CSVWidget method) _on_paint() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) _on_solve_complete() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) _on_solver_event() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) _param_label_widget() (menus.params_editor.EditableParam method) (menus.params_editor.OptionalEditableParam method) _params_group() (menus.params_editor.SolverParamsEditor method) (menus.params_viewer.SolverParamsViewer method) _parse_paint_event() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) _plot_widget() (menus.run_viewer.RunViewer method) _pos (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) _progress_widget() (menus.run_viewer.RunViewer method) _refresh() (motile_tracker.data_views.TrackGraph method) (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.TrackPoints method) (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views.layers.track_graph.TrackGraph method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) (motile_tracker.data_views.views.layers.track_points.TrackPoints method) (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) _revert_paint() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) _run_widget() (menus.run_editor.RunEditor method) _save_array() (backend.motile_run.MotileRun method) (backend.MotileRun method) _save_attrs() (backend.motile_run.MotileRun method) (backend.MotileRun method) (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) _save_graph() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) _save_list() (backend.motile_run.MotileRun method) (backend.MotileRun method) _save_params() (backend.motile_run.MotileRun method) (backend.MotileRun method) _save_seg() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) _scale_spin_box() (motile_tracker.import_export.menus.segmentation_widget.SegmentationWidget method) _selection_changed() (motile_tracker.data_views.views_coordinator.tracks_list.TracksList method) _set_edge_attr() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) _set_edge_attributes() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) _set_edges_attr() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) _set_feature() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_view_feature_widget.TreeViewFeatureWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) _set_mode() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_view_mode_widget.TreeViewModeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) _set_node_attr() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) _set_node_attributes() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) _set_nodes_attr() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) _set_solver_label() (menus.run_viewer.RunViewer method) _test_valid() (in module motile_tracker.import_export.load_tracks) _title_widget() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) _toggle_display_mode() (motile_tracker.data_views.views.tree_view.tree_view_mode_widget.TreeViewModeWidget method) _toggle_feature_mode() (motile_tracker.data_views.views.tree_view.tree_view_feature_widget.TreeViewFeatureWidget method) _type_string (motile_tracker.data_views.TrackLabels property) (motile_tracker.data_views.TrackPoints property) (motile_tracker.data_views.views.layers.track_labels.TrackLabels property) (motile_tracker.data_views.views.layers.track_points.TrackPoints property) _unpack_id() (backend.motile_run.MotileRun static method) (backend.MotileRun static method) _update_buttons() (motile_tracker.import_export.ImportTracksDialog method) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog method) _update_columns_left() (motile_tracker.import_export.menus.csv_widget.CSVFieldMapWidget method) _update_data() (motile_tracker.data_views.TrackPoints method) (motile_tracker.data_views.views.layers.track_points.TrackPoints method) _update_lineage_df() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) _update_measurement_widget() (motile_tracker.import_export.ImportTracksDialog method) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog method) _update_node_attrs() (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method) _update_node_segs() (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method) _update_pages() (motile_tracker.import_export.ImportTracksDialog method) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog method) _update_selected() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) _update_selection() (motile_tracker.data_views.TrackPoints method) (motile_tracker.data_views.views.layers.track_points.TrackPoints method) _update_track_data() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) _update_viewed_data() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method)

A

action_history (motile_tracker.data_model.tracks_controller.TracksController attribute) (motile_tracker.data_model.TracksController attribute) ActionGroup (class in motile_tracker.data_model.actions) ActionHistory (class in motile_tracker.data_model.action_history) actions (motile_tracker.data_model.actions.ActionGroup attribute) add() (motile_tracker.data_views.NodeSelectionList method) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList method) add_edge() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) add_edges() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method) add_list() (motile_tracker.data_views.NodeSelectionList method) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList method) add_napari_layers() (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup method) add_new_action() (motile_tracker.data_model.action_history.ActionHistory method) add_node() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) add_nodes() (motile_tracker.data_model.solution_tracks.SolutionTracks method) (motile_tracker.data_model.SolutionTracks method) (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method)

add_segmentation (motile_tracker.import_export.menus.csv_widget.CSVWidget attribute) add_tracks() (motile_tracker.data_views.views_coordinator.tracks_list.TracksList method) added (motile_tracker.data_model.actions.UpdateNodeSegs attribute) AddEdges (class in motile_tracker.data_model.actions) AddNodes (class in motile_tracker.data_model.actions) adj (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) appear_cost (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) attributes (motile_tracker.data_model.actions.AddNodes attribute) (motile_tracker.data_model.actions.DeleteNodes attribute) Attrs (in module motile_tracker.data_model.tracks) ATTRS_FILE (motile_tracker.data_model.Tracks attribute) (motile_tracker.data_model.tracks.Tracks attribute) AttrValue (in module motile_tracker.data_model.tracks) AttrValues (in module motile_tracker.data_model.tracks)

B

backend module backend.motile_run module backend.solve module

backend.solver_params module button_layout (motile_tracker.import_export.ImportTracksDialog attribute) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog attribute)

C

center_view() (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup method) change_feature (motile_tracker.data_views.views.tree_view.tree_view_feature_widget.TreeViewFeatureWidget attribute) change_mode (motile_tracker.data_views.views.tree_view.tree_view_mode_widget.TreeViewModeWidget attribute) colormap (motile_tracker.data_views.TrackGraph attribute) (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views.layers.track_graph.TrackGraph attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) column_dropdowns (motile_tracker.import_export.menus.measurement_widget.MeasurementWidget attribute) columns_left (motile_tracker.import_export.menus.csv_widget.CSVFieldMapWidget attribute) (motile_tracker.import_export.menus.measurement_widget.MeasurementWidget attribute) columns_updated (motile_tracker.import_export.menus.csv_widget.CSVFieldMapWidget attribute) construct_solver() (in module backend.solve) CONTINUE (motile_tracker.data_model.node_type.NodeType attribute) (motile_tracker.data_model.NodeType attribute) convert_4d_arr_to_zarr() (in module motile_tracker.example_data)

convert_to_zarr() (in module motile_tracker.example_data) create_edge() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) create_edge_btn (motile_tracker.application_menus.editing_menu.EditingMenu attribute) (motile_tracker.application_menus.EditingMenu attribute) csv (motile_tracker.import_export.ImportTracksDialog attribute) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog attribute) csv_browse_button (motile_tracker.import_export.menus.csv_widget.CSVWidget attribute) csv_columns (motile_tracker.import_export.menus.csv_widget.CSVFieldMapWidget attribute) csv_field_widget (motile_tracker.import_export.menus.csv_widget.CSVWidget attribute) csv_path_line (motile_tracker.import_export.menus.csv_widget.CSVWidget attribute) CSVFieldMapWidget (class in motile_tracker.import_export.menus.csv_widget) CSVWidget (class in motile_tracker.import_export.menus.csv_widget) CustomViewBox (class in motile_tracker.data_views.views.tree_view.tree_widget)

D

data_widget (motile_tracker.import_export.ImportTracksDialog attribute) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog attribute) default_size (motile_tracker.data_views.TrackPoints attribute) (motile_tracker.data_views.views.layers.track_points.TrackPoints attribute) delete (motile_tracker.data_views.views_coordinator.tracks_list.TracksButton attribute) delete() (backend.motile_run.MotileRun method) (backend.MotileRun method) (motile_tracker.data_model.Tracks class method) (motile_tracker.data_model.tracks.Tracks class method) delete_edge() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) delete_edge_btn (motile_tracker.application_menus.editing_menu.EditingMenu attribute) (motile_tracker.application_menus.EditingMenu attribute) delete_edges() (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method) delete_node() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method)

delete_node_btn (motile_tracker.application_menus.editing_menu.EditingMenu attribute) (motile_tracker.application_menus.EditingMenu attribute) delete_nodes() (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method) DeleteEdges (class in motile_tracker.data_model.actions) DeleteNodes (class in motile_tracker.data_model.actions) df (motile_tracker.import_export.menus.csv_widget.CSVWidget attribute) distance_cost (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) division_cost (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) download_ctc_dataset() (in module motile_tracker.example_data) download_zenodo_dataset() (in module motile_tracker.example_data) dropdown_menu (motile_tracker.data_views.views_coordinator.tracks_list.TracksList attribute) dtype (menus.params_editor.EditableParam attribute) (menus.params_viewer.ParamView attribute)

E

Edge (in module motile_tracker.data_model.tracks) edge_selection_cost (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) edges (motile_tracker.data_model.actions.AddEdges attribute) (motile_tracker.data_model.actions.DeleteEdges attribute) edit_run (menus.run_viewer.RunViewer attribute) edit_run() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) edit_run_widget (menus.motile_widget.MotileWidget attribute) (menus.MotileWidget attribute) EditableParam (class in menus.params_editor) EditableParamValue (class in menus.param_values) EditingMenu (class in motile_tracker.application_menus) (class in motile_tracker.application_menus.editing_menu)

emit_run() (menus.run_editor.RunEditor method) emit_update_features() (motile_tracker.import_export.menus.measurement_widget.MeasurementWidget method) END (motile_tracker.data_model.node_type.NodeType attribute) (motile_tracker.data_model.NodeType attribute) ensure_correct_labels() (in module motile_tracker.import_export.load_tracks) ensure_integer_ids() (in module motile_tracker.import_export.load_tracks) export (motile_tracker.data_views.views_coordinator.tracks_list.TracksButton attribute) export_dialog (motile_tracker.data_views.views_coordinator.tracks_list.TracksList attribute) export_to_csv() (motile_tracker.data_views.views_coordinator.tracks_list.TracksList method) export_tracks() (motile_tracker.data_model.solution_tracks.SolutionTracks method) (motile_tracker.data_model.SolutionTracks method) extract_lineage_tree() (in module motile_tracker.data_views.views.tree_view.tree_widget_utils) extract_sorted_tracks() (in module motile_tracker.data_views.views.tree_view.tree_widget_utils)

F

feature (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget attribute) (motile_tracker.data_views.views.tree_view.tree_view_feature_widget.TreeViewFeatureWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) feature_widget (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) file_button (motile_tracker.import_export.menus.segmentation_widget.FileFolderDialog attribute) file_dialog (motile_tracker.data_views.views_coordinator.tracks_list.TracksList attribute) FileFolderDialog (class in motile_tracker.import_export.menus.segmentation_widget) filter_visible_nodes() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) find_root() (in module motile_tracker.data_views.views.tree_view.tree_widget_utils)

finish_button (motile_tracker.import_export.ImportTracksDialog attribute) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog attribute) flip() (motile_tracker.data_views.NodeSelectionList method) (motile_tracker.data_views.views.tree_view.flip_axes_widget.FlipTreeWidget method) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList method) flip_tree (motile_tracker.data_views.views.tree_view.flip_axes_widget.FlipTreeWidget attribute) flip_widget (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) FlipTreeWidget (class in motile_tracker.data_views.views.tree_view.flip_axes_widget) Fluo_N2DL_HeLa() (in module motile_tracker.example_data) Fluo_N2DL_HeLa_crop() (in module motile_tracker.example_data) folder_button (motile_tracker.import_export.menus.segmentation_widget.FileFolderDialog attribute) from_tracks() (motile_tracker.data_model.solution_tracks.SolutionTracks class method) (motile_tracker.data_model.SolutionTracks class method)

G

g (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) gap_plot (menus.run_viewer.RunViewer attribute) gaps (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute) GAPS_FILENAME (in module backend.motile_run) get_area() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) get_areas() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) get_input_layer() (menus.run_editor.RunEditor method) get_instance() (motile_tracker.data_views.TracksViewer class method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer class method) get_iou() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) get_ious() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) get_measurements() (motile_tracker.import_export.menus.measurement_widget.MeasurementWidget method) get_name_map() (motile_tracker.import_export.menus.csv_widget.CSVFieldMapWidget method) get_next_track_id() (motile_tracker.data_model.solution_tracks.SolutionTracks method) (motile_tracker.data_model.SolutionTracks method) get_next_track_node() (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget method) get_pixels() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) get_position() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method)

get_positions() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) get_predecessor() (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget method) get_run() (menus.run_editor.RunEditor method) get_scale() (motile_tracker.import_export.menus.segmentation_widget.SegmentationWidget method) get_selected_path() (motile_tracker.import_export.menus.segmentation_widget.FileFolderDialog method) get_successor() (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget method) get_symbols() (motile_tracker.data_views.TrackPoints method) (motile_tracker.data_views.views.layers.track_points.TrackPoints method) get_time() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) get_times() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) get_track_id() (motile_tracker.data_model.solution_tracks.SolutionTracks method) (motile_tracker.data_model.SolutionTracks method) get_value() (menus.param_values.EditableParamValue method) (menus.param_values.StaticParamValue method) graph (motile_tracker.data_model.Tracks attribute) (motile_tracker.data_model.tracks.Tracks attribute) (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) GRAPH_FILE (motile_tracker.data_model.Tracks attribute) (motile_tracker.data_model.tracks.Tracks attribute)

I

image_browse_button (motile_tracker.import_export.menus.segmentation_widget.SegmentationWidget attribute) image_path_line (motile_tracker.import_export.menus.segmentation_widget.SegmentationWidget attribute) ImportTracksDialog (class in motile_tracker.import_export) (class in motile_tracker.import_export.menus.import_external_tracks_dialog) IN_POINTS_FILENAME (in module backend.motile_run) incl_z (motile_tracker.import_export.menus.csv_widget.CSVWidget attribute) (motile_tracker.import_export.menus.segmentation_widget.SegmentationWidget attribute) input_points (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute) inverse() (motile_tracker.data_model.actions.ActionGroup method) (motile_tracker.data_model.actions.AddEdges method) (motile_tracker.data_model.actions.AddNodes method) (motile_tracker.data_model.actions.DeleteEdges method) (motile_tracker.data_model.actions.DeleteNodes method) (motile_tracker.data_model.actions.TracksAction method) (motile_tracker.data_model.actions.UpdateNodeAttrs method) (motile_tracker.data_model.actions.UpdateNodeSegs method) (motile_tracker.data_model.actions.UpdateTrackID method)

iou_cost (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) iou_row (menus.params_editor.SolverParamsEditor attribute) is_valid() (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method)

K

keyPressEvent() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method)

keyReleaseEvent() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method)

L

layer_selection_box (menus.run_editor.RunEditor attribute) layout (motile_tracker.import_export.ImportTracksDialog attribute) (motile_tracker.import_export.menus.csv_widget.CSVWidget attribute) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog attribute) (motile_tracker.import_export.menus.measurement_widget.MeasurementWidget attribute) (motile_tracker.import_export.menus.segmentation_widget.FileFolderDialog attribute) lineage_df (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) list_updated (motile_tracker.data_views.NodeSelectionList attribute) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList attribute)

load() (backend.motile_run.MotileRun class method) (backend.MotileRun class method) (motile_tracker.data_model.Tracks class method) (motile_tracker.data_model.tracks.Tracks class method) load_motile_run() (motile_tracker.data_views.views_coordinator.tracks_list.TracksList method) load_tracks() (motile_tracker.data_views.views_coordinator.tracks_list.TracksList method) logger (in module backend.solve) (in module menus.motile_widget) (in module menus.run_editor) (in module motile_tracker.example_data)

M

MainApp (class in motile_tracker.application_menus) (class in motile_tracker.application_menus.main_app) mapping_layout (motile_tracker.import_export.menus.csv_widget.CSVFieldMapWidget attribute) mapping_widgets (motile_tracker.import_export.menus.csv_widget.CSVFieldMapWidget attribute) max_children (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) max_edge_distance (backend.solver_params.SolverParams attribute) (backend.SolverParams attribute) max_track_id (motile_tracker.data_model.solution_tracks.SolutionTracks attribute) (motile_tracker.data_model.SolutionTracks attribute) measurement_checkboxes (motile_tracker.import_export.menus.measurement_widget.MeasurementWidget attribute) measurement_widget (motile_tracker.import_export.ImportTracksDialog attribute) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog attribute) measurements (motile_tracker.import_export.menus.measurement_widget.MeasurementWidget attribute) MeasurementWidget (class in motile_tracker.import_export.menus.measurement_widget) menu_widget (motile_tracker.import_export.ImportTracksDialog attribute) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog attribute) menus module menus.motile_widget module menus.param_values module menus.params_editor module menus.params_viewer module menus.run_editor module menus.run_viewer module MenuWidget (class in motile_tracker.application_menus) (class in motile_tracker.application_menus.menu_widget) MetadataMenu (class in motile_tracker.import_export.menus.metadata_menu) mode (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.tree_view_mode_widget.TreeViewModeWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) mode_widget (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) module backend backend.motile_run backend.solve backend.solver_params menus menus.motile_widget menus.param_values menus.params_editor menus.params_viewer menus.run_editor menus.run_viewer motile_tracker motile_tracker.application_menus motile_tracker.application_menus.editing_menu motile_tracker.application_menus.main_app motile_tracker.application_menus.menu_widget motile_tracker.data_model motile_tracker.data_model.action_history motile_tracker.data_model.actions motile_tracker.data_model.node_type motile_tracker.data_model.solution_tracks motile_tracker.data_model.tracks motile_tracker.data_model.tracks_controller motile_tracker.data_views motile_tracker.data_views.views motile_tracker.data_views.views.layers motile_tracker.data_views.views.layers.track_graph motile_tracker.data_views.views.layers.track_labels motile_tracker.data_views.views.layers.track_points motile_tracker.data_views.views.layers.tracks_layer_group motile_tracker.data_views.views.tree_view motile_tracker.data_views.views.tree_view.flip_axes_widget motile_tracker.data_views.views.tree_view.navigation_widget motile_tracker.data_views.views.tree_view.tree_view_feature_widget motile_tracker.data_views.views.tree_view.tree_view_mode_widget motile_tracker.data_views.views.tree_view.tree_widget motile_tracker.data_views.views.tree_view.tree_widget_utils motile_tracker.data_views.views_coordinator motile_tracker.data_views.views_coordinator.node_selection_list motile_tracker.data_views.views_coordinator.tracks_list motile_tracker.data_views.views_coordinator.tracks_viewer motile_tracker.example_data motile_tracker.import_export motile_tracker.import_export.load_tracks motile_tracker.import_export.menus motile_tracker.import_export.menus.csv_widget motile_tracker.import_export.menus.import_external_tracks_dialog motile_tracker.import_export.menus.measurement_widget motile_tracker.import_export.menus.metadata_menu motile_tracker.import_export.menus.segmentation_widget motile_tracker.launcher

motile_tracker module motile_tracker.application_menus module motile_tracker.application_menus.editing_menu module motile_tracker.application_menus.main_app module motile_tracker.application_menus.menu_widget module motile_tracker.data_model module motile_tracker.data_model.action_history module motile_tracker.data_model.actions module motile_tracker.data_model.node_type module motile_tracker.data_model.solution_tracks module motile_tracker.data_model.tracks module motile_tracker.data_model.tracks_controller module motile_tracker.data_views module motile_tracker.data_views.views module motile_tracker.data_views.views.layers module motile_tracker.data_views.views.layers.track_graph module motile_tracker.data_views.views.layers.track_labels module motile_tracker.data_views.views.layers.track_points module motile_tracker.data_views.views.layers.tracks_layer_group module motile_tracker.data_views.views.tree_view module motile_tracker.data_views.views.tree_view.flip_axes_widget module motile_tracker.data_views.views.tree_view.navigation_widget module motile_tracker.data_views.views.tree_view.tree_view_feature_widget module motile_tracker.data_views.views.tree_view.tree_view_mode_widget module motile_tracker.data_views.views.tree_view.tree_widget module motile_tracker.data_views.views.tree_view.tree_widget_utils module motile_tracker.data_views.views_coordinator module motile_tracker.data_views.views_coordinator.node_selection_list module motile_tracker.data_views.views_coordinator.tracks_list module motile_tracker.data_views.views_coordinator.tracks_viewer module motile_tracker.example_data module motile_tracker.import_export module motile_tracker.import_export.load_tracks module motile_tracker.import_export.menus module motile_tracker.import_export.menus.csv_widget module motile_tracker.import_export.menus.import_external_tracks_dialog module motile_tracker.import_export.menus.measurement_widget module motile_tracker.import_export.menus.metadata_menu module motile_tracker.import_export.menus.segmentation_widget module motile_tracker.launcher module MotileRun (class in backend) (class in backend.motile_run) MotileWidget (class in menus) (class in menus.motile_widget) Mouse_Embryo_Membrane() (in module motile_tracker.example_data) mouseClickEvent() (motile_tracker.data_views.views.tree_view.tree_widget.CustomViewBox method) mouseDragEvent() (motile_tracker.data_views.views.tree_view.tree_widget.CustomViewBox method) move() (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget method)

N

name (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup attribute) (motile_tracker.data_views.views_coordinator.tracks_list.TracksButton attribute) name_widget (motile_tracker.import_export.menus.metadata_menu.MetadataMenu attribute) navigation_widget (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) NavigationWidget (class in motile_tracker.data_views.views.tree_view.navigation_widget) ndim (motile_tracker.data_model.Tracks attribute) (motile_tracker.data_model.tracks.Tracks attribute) negative (menus.params_editor.EditableParam attribute) new_attrs (motile_tracker.data_model.actions.UpdateNodeAttrs attribute) new_colormap() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) new_label() (in module motile_tracker.data_views.views.layers.track_labels) new_params (menus.params_editor.SolverParamsEditor attribute) (menus.params_viewer.SolverParamsViewer attribute) new_run (menus.motile_widget.MotileWidget attribute) (menus.MotileWidget attribute) new_run() (menus.run_editor.RunEditor method) new_track_id (motile_tracker.data_model.actions.UpdateTrackID attribute) next_button (motile_tracker.import_export.ImportTracksDialog attribute) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog attribute)

Node (in module motile_tracker.data_model.tracks) node_clicked (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) node_id_counter (motile_tracker.data_model.tracks_controller.TracksController attribute) (motile_tracker.data_model.TracksController attribute) node_id_to_track_id (motile_tracker.data_model.solution_tracks.SolutionTracks property) (motile_tracker.data_model.SolutionTracks property) node_ids (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) node_index_dict (motile_tracker.data_views.TrackPoints attribute) (motile_tracker.data_views.views.layers.track_points.TrackPoints attribute) nodes (motile_tracker.data_model.actions.AddNodes attribute) (motile_tracker.data_model.actions.DeleteNodes attribute) (motile_tracker.data_model.actions.UpdateNodeAttrs attribute) (motile_tracker.data_model.actions.UpdateNodeSegs attribute) (motile_tracker.data_views.TrackPoints attribute) (motile_tracker.data_views.views.layers.track_points.TrackPoints attribute) nodes_selected (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) NodeSelectionList (class in motile_tracker.data_views) (class in motile_tracker.data_views.views_coordinator.node_selection_list) NodeType (class in motile_tracker.data_model) (class in motile_tracker.data_model.node_type)

O

ok_button (motile_tracker.import_export.menus.segmentation_widget.FileFolderDialog attribute) old_track_id (motile_tracker.data_model.actions.UpdateTrackID attribute)

OptionalEditableParam (class in menus.params_editor) outline_pen (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute)

P

page1 (motile_tracker.import_export.ImportTracksDialog attribute) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog attribute) param_categories (menus.params_editor.SolverParamsEditor attribute) (menus.params_viewer.SolverParamsViewer attribute) param_label (menus.params_editor.EditableParam attribute) (menus.params_viewer.ParamView attribute) param_name (menus.params_editor.EditableParam attribute) (menus.params_viewer.ParamView attribute) param_value (menus.params_editor.EditableParam attribute) (menus.params_viewer.ParamView attribute) PARAMS_FILENAME (in module backend.motile_run) params_widget (menus.run_viewer.RunViewer attribute)

ParamView (class in menus.params_viewer) path_line_edit (motile_tracker.import_export.menus.segmentation_widget.FileFolderDialog attribute) pen (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) pixels (motile_tracker.data_model.actions.AddNodes attribute) (motile_tracker.data_model.actions.DeleteNodes attribute) (motile_tracker.data_model.actions.UpdateNodeSegs attribute) points_layer (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup attribute) pos_attr (motile_tracker.data_model.Tracks attribute) (motile_tracker.data_model.tracks.Tracks attribute) positions (motile_tracker.data_model.actions.AddNodes attribute) prev_attrs (motile_tracker.data_model.actions.UpdateNodeAttrs attribute) previous_button (motile_tracker.import_export.ImportTracksDialog attribute) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog attribute)

R

radio_2D (motile_tracker.import_export.menus.metadata_menu.MetadataMenu attribute) radio_3D (motile_tracker.import_export.menus.metadata_menu.MetadataMenu attribute) radio_buttons (motile_tracker.import_export.menus.measurement_widget.MeasurementWidget attribute) read_ctc_dataset() (in module motile_tracker.example_data) read_zenodo_dataset() (in module motile_tracker.example_data) redo() (motile_tracker.data_model.action_history.ActionHistory method) (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method) (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) redo_btn (motile_tracker.application_menus.editing_menu.EditingMenu attribute) (motile_tracker.application_menus.EditingMenu attribute) redo_stack (motile_tracker.data_model.action_history.ActionHistory attribute) refresh (motile_tracker.data_model.Tracks attribute) (motile_tracker.data_model.tracks.Tracks attribute) remove_edge() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method)

remove_edges() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) remove_napari_layer() (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup method) remove_napari_layers() (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup method) remove_node() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) remove_nodes() (motile_tracker.data_model.solution_tracks.SolutionTracks method) (motile_tracker.data_model.SolutionTracks method) (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) remove_tracks() (motile_tracker.data_views.views_coordinator.tracks_list.TracksList method) reset() (motile_tracker.data_views.NodeSelectionList method) (motile_tracker.data_views.views_coordinator.node_selection_list.NodeSelectionList method) reset_progress() (menus.run_viewer.RunViewer method) run (menus.run_viewer.RunViewer attribute) run_name (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute) (menus.run_editor.RunEditor attribute) RunEditor (class in menus.run_editor) RunViewer (class in menus.run_viewer)

S

save (motile_tracker.data_views.views_coordinator.tracks_list.TracksButton attribute) save() (backend.motile_run.MotileRun method) (backend.MotileRun method) (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) save_dialog (motile_tracker.data_views.views_coordinator.tracks_list.TracksList attribute) save_tracks() (motile_tracker.data_views.views_coordinator.tracks_list.TracksList method) scale (motile_tracker.data_model.Tracks attribute) (motile_tracker.data_model.tracks.Tracks attribute) SEG_FILE (motile_tracker.data_model.Tracks attribute) (motile_tracker.data_model.tracks.Tracks attribute) seg_layer (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup attribute) SegMask (in module motile_tracker.data_model.tracks) segmentation (motile_tracker.data_model.Tracks attribute) (motile_tracker.data_model.tracks.Tracks attribute) (motile_tracker.import_export.ImportTracksDialog attribute) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog attribute) segmentation_checkbox (motile_tracker.import_export.menus.metadata_menu.MetadataMenu attribute) segmentation_page (motile_tracker.import_export.ImportTracksDialog attribute) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog attribute) SegmentationWidget (class in motile_tracker.import_export.menus.segmentation_widget) select_column_radio_buttons (motile_tracker.import_export.menus.measurement_widget.MeasurementWidget attribute) select_file() (motile_tracker.import_export.menus.segmentation_widget.FileFolderDialog method) select_folder() (motile_tracker.import_export.menus.segmentation_widget.FileFolderDialog method) select_points_in_rect() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) selected_nodes (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) selected_rect (motile_tracker.data_views.views.tree_view.tree_widget.CustomViewBox attribute) selected_track (motile_tracker.data_views.TrackLabels attribute) (motile_tracker.data_views.views.layers.track_labels.TrackLabels attribute) set_data() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) set_display_mode() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) set_endpoint_node() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) set_keybinds() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) set_linear_node() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) set_mouse_enabled() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) set_napari_view() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) set_pixels() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) set_point_size() (motile_tracker.data_views.TrackPoints method) (motile_tracker.data_views.views.layers.track_points.TrackPoints method) set_position() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) set_positions() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method)

set_selection() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) set_split_node() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) set_time() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) set_times() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) set_track_id() (motile_tracker.data_model.solution_tracks.SolutionTracks method) (motile_tracker.data_model.SolutionTracks method) set_tracks() (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup method) set_view() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) show_all_radio (motile_tracker.data_views.views.tree_view.tree_view_mode_widget.TreeViewModeWidget attribute) show_area_radio (motile_tracker.data_views.views.tree_view.tree_view_feature_widget.TreeViewFeatureWidget attribute) show_lineage_radio (motile_tracker.data_views.views.tree_view.tree_view_mode_widget.TreeViewModeWidget attribute) show_tree_radio (motile_tracker.data_views.views.tree_view.tree_view_feature_widget.TreeViewFeatureWidget attribute) showAxRect() (motile_tracker.data_views.views.tree_view.tree_widget.CustomViewBox method) sizeHint() (motile_tracker.data_views.views_coordinator.tracks_list.TracksButton method) sizes (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) SolutionTracks (class in motile_tracker.data_model) (class in motile_tracker.data_model.solution_tracks) solve() (in module backend) (in module backend.solve) solve_with_motile() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) solver_event_update() (menus.run_viewer.RunViewer method) solver_label (menus.run_viewer.RunViewer attribute) solver_params (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute) (menus.params_editor.SolverParamsEditor attribute) (menus.params_viewer.SolverParamsViewer attribute) solver_params_widget (menus.run_editor.RunEditor attribute) solver_update (menus.motile_widget.MotileWidget attribute) (menus.MotileWidget attribute) SolverParams (class in backend) (class in backend.solver_params) SolverParamsEditor (class in menus.params_editor) SolverParamsViewer (class in menus.params_viewer) sort_track_ids() (in module motile_tracker.data_views.views.tree_view.tree_widget_utils) SPLIT (motile_tracker.data_model.node_type.NodeType attribute) (motile_tracker.data_model.NodeType attribute) stacked_widget (motile_tracker.import_export.ImportTracksDialog attribute) (motile_tracker.import_export.menus.import_external_tracks_dialog.ImportTracksDialog attribute) STAMP_FORMAT (in module backend.motile_run) standard_fields (motile_tracker.import_export.menus.csv_widget.CSVFieldMapWidget attribute) start_node (motile_tracker.data_model.actions.UpdateTrackID attribute) start_run (menus.run_editor.RunEditor attribute) StaticParamValue (class in menus.param_values) status (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute) symbolBrush (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) symbolmap (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) symbols (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute)

T

time (backend.motile_run.MotileRun attribute) (backend.MotileRun attribute) time_attr (motile_tracker.data_model.Tracks attribute) (motile_tracker.data_model.tracks.Tracks attribute) times (motile_tracker.data_model.actions.AddNodes attribute) title (menus.params_editor.EditableParam attribute) (menus.params_viewer.ParamView attribute) toggle_display_mode() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) toggle_enable() (menus.params_editor.OptionalEditableParam method) toggle_feature_mode() (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) toggle_visible() (menus.params_editor.OptionalEditableParam method) track_df (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) TrackGraph (class in motile_tracker.data_views) (class in motile_tracker.data_views.views.layers.track_graph) tracking_layers (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) TrackLabels (class in motile_tracker.data_views) (class in motile_tracker.data_views.views.layers.track_labels) TrackListWidget (class in motile_tracker.data_views.views_coordinator.tracks_list) TrackPoints (class in motile_tracker.data_views) (class in motile_tracker.data_views.views.layers.track_points) Tracks (class in motile_tracker.data_model) (class in motile_tracker.data_model.tracks) tracks (motile_tracker.data_model.actions.TracksAction attribute) (motile_tracker.data_model.tracks_controller.TracksController attribute) (motile_tracker.data_model.TracksController attribute) (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup attribute) (motile_tracker.data_views.views_coordinator.tracks_list.TracksButton attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute)

tracks_from_df() (in module motile_tracker.import_export) (in module motile_tracker.import_export.load_tracks) tracks_layer (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup attribute) tracks_layer_graph (motile_tracker.data_views.TrackGraph attribute) (motile_tracker.data_views.views.layers.track_graph.TrackGraph attribute) tracks_list (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views_coordinator.tracks_list.TracksList attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) tracks_updated (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) tracks_viewer (motile_tracker.application_menus.editing_menu.EditingMenu attribute) (motile_tracker.application_menus.EditingMenu attribute) (motile_tracker.data_views.TrackGraph attribute) (motile_tracker.data_views.TrackLabels attribute) (motile_tracker.data_views.TrackPoints attribute) (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.layers.track_graph.TrackGraph attribute) (motile_tracker.data_views.views.layers.track_labels.TrackLabels attribute) (motile_tracker.data_views.views.layers.track_points.TrackPoints attribute) (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) TracksAction (class in motile_tracker.data_model.actions) TracksButton (class in motile_tracker.data_views.views_coordinator.tracks_list) TracksController (class in motile_tracker.data_model) (class in motile_tracker.data_model.tracks_controller) TracksLayerGroup (class in motile_tracker.data_views.views.layers.tracks_layer_group) TracksList (class in motile_tracker.data_views.views_coordinator.tracks_list) TracksViewer (class in motile_tracker.data_views) (class in motile_tracker.data_views.views_coordinator.tracks_viewer) tree_widget (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) TreePlot (class in motile_tracker.data_views.views.tree_view.tree_widget) TreeViewFeatureWidget (class in motile_tracker.data_views.views.tree_view.tree_view_feature_widget) TreeViewModeWidget (class in motile_tracker.data_views.views.tree_view.tree_view_mode_widget) TreeWidget (class in motile_tracker.data_views) (class in motile_tracker.data_views.views.tree_view.tree_widget)

U

undo() (motile_tracker.data_model.action_history.ActionHistory method) (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method) (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.TreeWidget method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) undo_btn (motile_tracker.application_menus.editing_menu.EditingMenu attribute) (motile_tracker.application_menus.EditingMenu attribute) undo_pointer (motile_tracker.data_model.action_history.ActionHistory property) undo_stack (motile_tracker.data_model.action_history.ActionHistory attribute) update() (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot method) update_buttons (motile_tracker.import_export.menus.csv_widget.CSVWidget attribute) (motile_tracker.import_export.menus.segmentation_widget.SegmentationWidget attribute) update_buttons() (motile_tracker.application_menus.editing_menu.EditingMenu method) (motile_tracker.application_menus.EditingMenu method) update_features (motile_tracker.import_export.menus.measurement_widget.MeasurementWidget attribute) update_from_params() (menus.params_editor.EditableParam method) (menus.params_editor.OptionalEditableParam method) (menus.params_viewer.ParamView method) update_label_colormap() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) update_labels_layers() (menus.run_editor.RunEditor method)

update_layer_selection() (menus.run_editor.RunEditor method) update_napari_tracks() (in module motile_tracker.data_views.views.layers.track_graph) update_node_attrs() (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method) update_point_outline() (motile_tracker.data_views.TrackPoints method) (motile_tracker.data_views.views.layers.track_points.TrackPoints method) update_run() (menus.run_viewer.RunViewer method) update_segmentations() (motile_tracker.data_model.Tracks method) (motile_tracker.data_model.tracks.Tracks method) (motile_tracker.data_model.tracks_controller.TracksController method) (motile_tracker.data_model.TracksController method) update_selected_label() (motile_tracker.data_views.TrackLabels method) (motile_tracker.data_views.views.layers.track_labels.TrackLabels method) update_selection() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) update_track_visibility() (motile_tracker.data_views.TrackGraph method) (motile_tracker.data_views.views.layers.track_graph.TrackGraph method) update_tracks() (motile_tracker.data_views.TracksViewer method) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer method) update_value() (menus.param_values.EditableParamValue method) (menus.param_values.StaticParamValue method) update_visible() (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup method) UpdateNodeAttrs (class in motile_tracker.data_model.actions) UpdateNodeSegs (class in motile_tracker.data_model.actions) UpdateTrackID (class in motile_tracker.data_model.actions)

V

valueChanged (menus.param_values.EditableParamValue attribute) (menus.param_values.StaticParamValue attribute) view_direction (motile_tracker.data_views.TreeWidget attribute) (motile_tracker.data_views.views.tree_view.navigation_widget.NavigationWidget attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreePlot attribute) (motile_tracker.data_views.views.tree_view.tree_widget.TreeWidget attribute) view_run() (menus.motile_widget.MotileWidget method) (menus.MotileWidget method) view_run_widget (menus.motile_widget.MotileWidget attribute) (menus.MotileWidget attribute) view_tracks (motile_tracker.data_views.views_coordinator.tracks_list.TracksList attribute)

viewer (in module motile_tracker.launcher) (menus.motile_widget.MotileWidget attribute) (menus.MotileWidget attribute) (menus.run_editor.RunEditor attribute) (motile_tracker.data_views.TrackLabels attribute) (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views.layers.track_labels.TrackLabels attribute) (motile_tracker.data_views.views.layers.tracks_layer_group.TracksLayerGroup attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute) visible (motile_tracker.data_views.TracksViewer attribute) (motile_tracker.data_views.views_coordinator.tracks_viewer.TracksViewer attribute)

X

x_spin_box (motile_tracker.import_export.menus.segmentation_widget.SegmentationWidget attribute)

Y

y_spin_box (motile_tracker.import_export.menus.segmentation_widget.SegmentationWidget attribute)

Z

z_spin_box (motile_tracker.import_export.menus.segmentation_widget.SegmentationWidget attribute)